Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1510 ATGCCCCATAGAAGCTGCATTTTGCTACTGTGTATTGTTGGTTCCATGTTAGCACTTGAAGGAGCTGCAATGCTGAACCTAACTCTACCAGGACAACACCCTGACCCTGAAGCTGTTGCTAATGAAGTCCACAGGAAGGTGAATGGTTCAATGGCAAGAAGGGAAATGCTGTCGACAGTGTCTTCTTGCCTAACTGGTAACCCCATAGACGATTGCTGGAAATGTGACCCAGATTGGCCCAACAACCGGCAGAGGCTGGCAGACTGCGCCATTGGGTTTGGGCAACACGCTAAGGGCGGAAAGGATGGGGAGTTCTACATTGTCACAGATTCCTCAGATGATGATGCAGTAAACCCTAAGCCAGGAACACTCAGATATGCTGTCATACAGAATGAGCCGCTGTGGATCGTGTTCCCAAGTAACATGAAGATTAAGCTCTCTCAAGAACTCATCTTCAACAGTTACAAGACCCTTGATGGCCGTGGTGCTGATGTCCACATTGTTGGTGGTGGATGCATTACTCTCCAGTATATAAGTAATGTTATCATACACAACATTCATATCCACCATTGTCATCCTTCAGGGAACACAAATGTGCGTTCCCGCCCTGACCACTATGGCTACCGGACGCTGTCTGACGGGGATGGAATCTCCATCTTTGGGTCCAAAGACATATGGATAGACCACTGCACGCTGTCACGGTGCAAGGACGGGCTCATCGACGCAGTCATGGGCTCCACTGGAATCACAATCTCCAATAACTACTTCTCCCACCACAATGAAGTCATGCTCTTAGGCCACAGTGATGACTACCTGCCAGACTCAGGCATGCAGGTGACCATTGCCTTCAACCATTTCGGTCCCATGCTCGTCCAGCGCATGCCACGTTGCCGCCGGGGCTACATCCATGTGGTCAACAACGATTTCACGCGGTGGCAGATGTATGCCATTGGAGGCAGTGGGGAGCCCACCATTAACAGCCAGGGGAACCGCTACACGGCACCCCTGAACCCCTTTGCAAAGGAGGTGACCAAGAGGGTTGACACTGCGGAGGGGAAGTGGAAGGGCTGGAATTGGAGGTCGGAGGGGGATATCATGGTGAATGGCGCGTTTTTTGTGGCCTCTGGGGAAGGAGTTGAGGTTAAGTATGAGAAGGCTTATAGTGTTGAGCCAAAGTCTGCTGATAGGATTTCTCAGCTTACCATGTCCGCCGGCGTTCTCGGCGTTGCCAAGGACAACAGTGTGGGAATGTGGAGCAAAGGACCTAACAGCCAGGGCCAGGGCGACGGAGTCACATGGTTGGTGCCGGAATACACAGAGGACTATTCGCAGGGCTCAAGGGTGGTGCTGCCATCTTCCTCTACTTTCACCCTTGTGTGGTCTTTCCTGCTCTTGTTCATACTGTCTTGTAACAAGATACCGTCAACAGTTATTCTATAA 1440 0.5118 MPHRSCILLLCIVGSMLALEGAAMLNLTLPGQHPDPEAVANEVHRKVNGSMARREMLSTVSSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQHAKGGKDGEFYIVTDSSDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMKIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSRPDHYGYRTLSDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGPMLVQRMPRCRRGYIHVVNNDFTRWQMYAIGGSGEPTINSQGNRYTAPLNPFAKEVTKRVDTAEGKWKGWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPKSADRISQLTMSAGVLGVAKDNSVGMWSKGPNSQGQGDGVTWLVPEYTEDYSQGSRVVLPSSSTFTLVWSFLLLFILSCNKIPSTVIL* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1510 479 PANTHER PECTATE LYASE 12-RELATED 2 425 - -
Ahy6g1510 479 Gene3D - 66 408 IPR012334 -
Ahy6g1510 479 SUPERFAMILY Pectin lyase-like 59 396 IPR011050 -
Ahy6g1510 479 Pfam Pectate lyase 150 326 IPR002022 -
Ahy6g1510 479 SMART amb_all 141 338 IPR002022 -
Ahy6g1510 479 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Ahy6g1510 479 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Ahy6g1510 479 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Ahy6g1510 479 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Ahy6g1510 479 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Ahy6g1510 479 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Ahy6g1510 479 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Ahy6g1510 479 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Ahy6g1510 479 PANTHER PECTATE LYASE 18-RELATED 2 425 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1510 Ahy-Chr6 45234473 45236618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1510 1 419 Polysaccharide Lyase AT3G53190 77.336 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1510 K01728 - gmx:100775595 775.393