Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1492 ATGGACAATCCCTTCGACCACCATGTTCCTCCGCCACACGCCACCGTCACCGCAGCTGACTACGGAGTCTCCGATGACGACGAGGACGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGATGACAACGAAGAGGACGAAGATTCATCGCCTAGGGCTTTCCCAGTGGCTCCTTCCACAACTTCTAATCCACAGCCAATTGTTATCACCGTGGAATCGCAGTCGCATAGCAGCTTCGGAGACGACGAAGTAAGCAACAAGCGCCGCAAAACGGAAGGCCGAGAGGCGTCGTCTTCGTCTTTGGCAATTGATGGCAGTCAAGGCAGCGAGTGGAACCGCACTGACATTGACGGCCTCTTCTGCCCTATCTGTATGGAAGCTTGGACCAACAGCGGCGACCACCAAATCTGTTGTCTTCCTTGTGGACACATATATGGTATGTCTTGTATAAAAAGATGGCTTCAACAGCGACGAAGTACAGGCAAGTGTCCACAATGCAATATAAAATGCTCATTAAAGGATGTGAGGAAGCTCTATGCATCTCGAGTAGTTACTGTTGATGATGAATCTCAGAAGAAAATTCGGTTGCTTGAAGCCAAATGTGCTGCACTGGAAAGTAAGGGTGCTGATTGGCGTGTGAAAGAGGCTATATGGCGGAAAAGAGAAGCTGCATACCGTCTGGAAATCCAGAAGCTTAAAGCGCTACTACTGGATATGGAGAGAATGCATTTTGAACTCATAGATGGCACTCAGGATTATCAGTGGAGATCTGAAAAGGAGCAAAATTTTAGCTTAAAGTCCCATGTAAAAGCATCTTTTTGCAATTTTGCATTACAGAAAACATTTAATATGGATGATGCACGAGTATTTGATATGGATGTATCCAATCAAATTTTACTAATTGCACGAAAGCCAAGGGTGATAGGTGGAGCAGACTTTCTAACTAAAATGAGCTTGATACCTCCATTCGATATGGAAGATATCTTATTGCCTTCTACTACAGAGGGTATTAGAGACCTACATATTTCTCCTTCTGATAGAAGCCTAGCCCTCTATGCTTCAACAGGGAAGAAGTTATCAGTGCTCAGTGTGCAGAGCAAGAATACTGTTGTCAACTATGATCTACAGGTTCCTCCTTGGTCATGTTCTTGGGATCTCAACAATTCACATTACATGTATACTGGACTTCAGAATGGTTCTGTCTTGGTGTTTGATATACGACAAACTGCAGGACCCATGAAGTCTTTAGTTGGATTGACTAGCAACCCTGTTCATACTGTTCATTCTCTTCTGCAAACTTCATGTCTTCCTAACTCCATCTTATCTGCATCTGCCATTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAAGGGCCATTCATGCTTCCTGAATCTGATAACCAAGGAGTTTGTATATCCCTTGCCTATTGCCCTAGCAGTGATGACGTTGTTGTTTCATACCGTCCGAAATTTGACATGTCAATGGGTACGCAGCTTTCTCAACTATCATCCACTCCTTCTCAAGTAATTGGAGCAGGAATGCAGGGCTGTCATGTCTTATTCAAGAGACAGCGCACTGATTATTTCAAAAAGATGGGTTCCTCGAATGCCAATCCAAGTAAAATTCGATTTCCAAAACATGCTATTATAGACATAGAGGGTCAAAGAAGTTTGTTTGCAGCTGTAGATGAAGCAACATTTGAATTGATCTTGCACGAGCTGCCTTCTTTTAGCGTCAACCAACGATTCAAACTGCCTGCTCAGGCTCGTGATATTAGGTACTCTCGGAGCTGTGGAATTCTTGGCTGTTTGAGTGAGACGACATTGCAACTTTTCTACACCAAAGTCTTGTGA 1875 0.4395 MDNPFDHHVPPPHATVTAADYGVSDDDEDEEEEEEEEEEEEEEEEEEDDNEEDEDSSPRAFPVAPSTTSNPQPIVITVESQSHSSFGDDEVSNKRRKTEGREASSSSLAIDGSQGSEWNRTDIDGLFCPICMEAWTNSGDHQICCLPCGHIYGMSCIKRWLQQRRSTGKCPQCNIKCSLKDVRKLYASRVVTVDDESQKKIRLLEAKCAALESKGADWRVKEAIWRKREAAYRLEIQKLKALLLDMERMHFELIDGTQDYQWRSEKEQNFSLKSHVKASFCNFALQKTFNMDDARVFDMDVSNQILLIARKPRVIGGADFLTKMSLIPPFDMEDILLPSTTEGIRDLHISPSDRSLALYASTGKKLSVLSVQSKNTVVNYDLQVPPWSCSWDLNNSHYMYTGLQNGSVLVFDIRQTAGPMKSLVGLTSNPVHTVHSLLQTSCLPNSILSASAIGLCQWNIDSEEGPFMLPESDNQGVCISLAYCPSSDDVVVSYRPKFDMSMGTQLSQLSSTPSQVIGAGMQGCHVLFKRQRTDYFKKMGSSNANPSKIRFPKHAIIDIEGQRSLFAAVDEATFELILHELPSFSVNQRFKLPAQARDIRYSRSCGILGCLSETTLQLFYTKVL* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1492 624 SMART ring_2 128 173 IPR001841 -
Ahy6g1492 624 SUPERFAMILY RING/U-box 119 180 - -
Ahy6g1492 624 Coils Coil 194 214 - -
Ahy6g1492 624 Pfam Ring finger domain 128 174 IPR001841 -
Ahy6g1492 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 234 IPR013083 -
Ahy6g1492 624 PANTHER RFWD3 PROTEIN 26 619 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Ahy6g1492 624 CDD mRING-C3HGC3_RFWD3 124 174 - -
Ahy6g1492 624 MobiDBLite consensus disorder prediction 88 102 - -
Ahy6g1492 624 MobiDBLite consensus disorder prediction 1 115 - -
Ahy6g1492 624 SUPERFAMILY WD40 repeat-like 283 493 IPR036322 GO:0005515
Ahy6g1492 624 MobiDBLite consensus disorder prediction 22 55 - -
Ahy6g1492 624 Coils Coil 23 56 - -
Ahy6g1492 624 MobiDBLite consensus disorder prediction 61 87 - -
Ahy6g1492 624 Gene3D - 255 502 IPR015943 GO:0005515
Ahy6g1492 624 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 26 619 - -
Ahy6g1492 624 ProSiteProfiles Zinc finger RING-type profile. 128 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1492 Ahy-Chr6 41625067 41630215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1492 47 186 C3H Transcription Factor Family AT5G48655 29.412 1.65e-07 50.4