Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1435 ATGGGCAACGCATCGAGTAGCGGCGGCACCACCCGTCGGCGACATGTTGTTTCTAGAAGGACTCATCCACCGCCTCCTCCTCCGGTGACGCCGCAGCCGGAGATCACCTCCAATCCCTTCCTGTATCCCGGAGGCAACCCGTACCCGGCTCAGTACCCGAACCAGAACCGTCCGATGCAATACCCGCAGTACCCTTACCCCGCTTACTACCATCCGCCGCCGACGGTGCCCTTCCCCCACCACAACCAGCACCAGCACCAGCCTCAAATGGGGGTCGGGTGGGTTGGCGGCCGAGGTTACCCTTGCGGGACCATGGTGGCTCCTCCAGCACCTATCGTGGAGCACCAGAAGGCCGTGACAATCAGGAACGACGTAAATGTCAAGAAGGAAACATTGAAGATCGAGCCCGATGAGGTGAACCCTGGCCAATTCCTCGTCTCTTTCACGTTTGACGCCACGGTTTCTGGCTGCATCACAATTTATTTCTTTGCAAAAGAAAATGAAAGCTGCATTCTAACACCAGTGAAAGAAAACCTTCTCGCACCCGTGACGGTTAATTTTCAGCAAGGTCTTGGCCAGAAGTTCAGGCAGCCTGCTGGAAGTGGTATTGATTTTAAAATGTTTAATGAGACAGAATTATTGCAAGTGGGTGAGATGGATGTCTACCCTCTAGTAGTAAAGGCAGATGCATCTCCTAGTAATACCAATGGATCAGATGAAACTACAACATCTAATACCAGAAACTCGCAGATAACACAAGCAGTGTTTGAGAAGGAGAAAGGTGAATTCCGGGTAAAAGTTGTCAAGCAGATTTTGTGGGCGAATGGAATGAGGTATGAGTTGCAGGAGATATACGGTATTGGAAGTTCAACAGAGACTGGTGCAGATGAGAGTGACCAGGGGAAAGAATGTGTCATCTGTTTGACAGAGCCTCGCGACACAATTGTCCATCCCTGCCGACATATGTGCATGTGTAATGGATGCGCAAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGACCTGAGGAATGA 1077 0.5051 MGNASSSGGTTRRRHVVSRRTHPPPPPPVTPQPEITSNPFLYPGGNPYPAQYPNQNRPMQYPQYPYPAYYHPPPTVPFPHHNQHQHQPQMGVGWVGGRGYPCGTMVAPPAPIVEHQKAVTIRNDVNVKKETLKIEPDEVNPGQFLVSFTFDATVSGCITIYFFAKENESCILTPVKENLLAPVTVNFQQGLGQKFRQPAGSGIDFKMFNETELLQVGEMDVYPLVVKADASPSNTNGSDETTTSNTRNSQITQAVFEKEKGEFRVKVVKQILWANGMRYELQEIYGIGSSTETGADESDQGKECVICLTEPRDTIVHPCRHMCMCNGCAKVLRFQTNRCPICRQPVERLLEIKVGPEE* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1435 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 357 - -
Ahy6g1435 358 PANTHER MAHOGUNIN 1 357 IPR045194 GO:0061630
Ahy6g1435 358 MobiDBLite consensus disorder prediction 230 249 - -
Ahy6g1435 358 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 303 343 IPR045195 -
Ahy6g1435 358 MobiDBLite consensus disorder prediction 1 48 - -
Ahy6g1435 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 353 IPR013083 -
Ahy6g1435 358 Pfam Zinc finger, C3HC4 type (RING finger) 302 348 - -
Ahy6g1435 358 SUPERFAMILY RING/U-box 303 348 - -
Ahy6g1435 358 ProSiteProfiles Zinc finger RING-type profile. 304 343 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1435 Ahy-Chr6 29597607 29600467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1435 100 323 C3H Transcription Factor Family AT3G09770 61.304 1.07e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1435 - - aprc:113862864 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1596 16 40787224 40790087 Ahy6g1435 6 29597607 29600467 hybridization
Ahy6g1435 6 29597607 29600467 Ahy12g3088 12 120340269 120343799 PCT
Ahy6g1435 6 29597607 29600467 Ahy2g2671 2 102742344 102745874 PCT
Ahy12g3088 12 120340269 120343799 Ahy6g1435 6 29597607 29600467 PCT
Ahy2g2671 2 102742344 102745874 Ahy6g1435 6 29597607 29600467 PCT