Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1426 ATGTGGTTTTTACAGATATGCTTGCGGTGTCGACGGCGTGGTCACCGAGCTAAGAATTGCCCCGAAGTTCAAGTTGGTTCCAATTATGACAAGTATTGTTACAATTGTGGAGAAACTGGTCATTCACTTGCAAATTGTCCCCACCATGTTCAAGAAGGAGGGACAAAGTTTGCAGAGTGCTTTGTCTGTAAACAGCAAGGACACTTGAGTAAAAACTGCCCTCAAAATGCTCATGGCATCTATCCTAAGGGTGGTTGTTGTAAAATATGTGGTGGCGTGACACATTTGGTAAGGGATTGCCCCGAAAAAGAATGGTACTTGTATTATGCAAAGCTTATAACTCCATTTCTTCCTTCAGCAATGAGACTGAGAAATGAACAGAGGCCTTGTGGAACGGTAACCAAATTTGTGAGTGGGGATGACATTGAGGATGACTTCATGATAGATGACATAAATAACAGAGACAAGGACAAGTCCTCAAAGTCCAAAGACGGTCAAGCAAAACCAAAAAAGGGTCCTAAAGTTGTGAACTTCAGCTAA 540 0.4222 MWFLQICLRCRRRGHRAKNCPEVQVGSNYDKYCYNCGETGHSLANCPHHVQEGGTKFAECFVCKQQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLVRDCPEKEWYLYYAKLITPFLPSAMRLRNEQRPCGTVTKFVSGDDIEDDFMIDDINNRDKDKSSKSKDGQAKPKKGPKVVNFS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1426 179 SMART c2hcfinal6 6 22 IPR001878 GO:0003676|GO:0008270
Ahy6g1426 179 SMART c2hcfinal6 86 102 IPR001878 GO:0003676|GO:0008270
Ahy6g1426 179 SMART c2hcfinal6 32 48 IPR001878 GO:0003676|GO:0008270
Ahy6g1426 179 SMART c2hcfinal6 59 75 IPR001878 GO:0003676|GO:0008270
Ahy6g1426 179 SUPERFAMILY Retrovirus zinc finger-like domains 53 103 IPR036875 GO:0003676|GO:0008270
Ahy6g1426 179 MobiDBLite consensus disorder prediction 148 179 - -
Ahy6g1426 179 ProSiteProfiles Zinc finger CCHC-type profile. 33 47 IPR001878 GO:0003676|GO:0008270
Ahy6g1426 179 ProSiteProfiles Zinc finger CCHC-type profile. 7 22 IPR001878 GO:0003676|GO:0008270
Ahy6g1426 179 ProSiteProfiles Zinc finger CCHC-type profile. 60 75 IPR001878 GO:0003676|GO:0008270
Ahy6g1426 179 PANTHER OS04G0555800 PROTEIN 5 178 - -
Ahy6g1426 179 SUPERFAMILY Retrovirus zinc finger-like domains 5 49 IPR036875 GO:0003676|GO:0008270
Ahy6g1426 179 Pfam Zinc knuckle 6 21 IPR025836 -
Ahy6g1426 179 Pfam Zinc knuckle 86 101 IPR025836 -
Ahy6g1426 179 Gene3D - 5 55 - -
Ahy6g1426 179 MobiDBLite consensus disorder prediction 149 170 - -
Ahy6g1426 179 Pfam Zinc knuckle 32 48 IPR001878 GO:0003676|GO:0008270
Ahy6g1426 179 Pfam Zinc knuckle 60 75 IPR001878 GO:0003676|GO:0008270
Ahy6g1426 179 Gene3D - 56 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1426 Ahy-Chr6 28481115 28482752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1426 7 104 C2H2 Transcription Factor Family AT5G20220 29.310 6.79e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1426 - K05765 ahf:112805480 369.777