Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1406 ATGTTGGATCTTAATCTCAACGCCGATTCCGCCTCCGGCATCCAAATGGAAAGTTCTGGAAGCTTCAATTCCTCCCTCGCCAATGCCGACACCGAGGACTCATGCTCCTACGGCGGGGCTGACGCCGTAGCATACAACTTCGCGATACTCAAGAACGCCGTCGGCGGGGACGGAGACGCTGGAGCTGCCGGAGACGACGGATGTGTACGGACAATCCAGCTTTTTCCGATGGTCGGAGCCGGCGATGGTGTTGCAGCTGAGCAGTTATGTGGCTCGTCATCAGTGTTGGAATTTGAGACGAAGGAGGATCGCGGCGGTGGTAGTGCGACGGCGGCGGAGCAGAGAATGGTTCCTCAGAGGGCGCAGCAGGTGAAGAAGAGTCGGCGTGGACCGAGGTCGCGAAGCTCGCAGTATCGCGGCGTCACGTTTTATCGAAGGACCGGACGATGGGAATCGCATATTTGGGACTGTGGGAAACAAGTGTACTTGGGTGGATTTGACACAGCACATGCTGCAGCTAGGGCATACGATCGAGCTGCGATCAAGTTCCGTGGCGTTGATGCAGATATCAATTTCAATGTCAGCGATTATGATGAAGATATAAAGCAGATGAGTAACTTTACAAAGGAAGAGTTTGTGCATATTCTGCGTAGGCAGAGCACTGGTTTTTCGAGGGGTAGCTCCAAATACAGGGGAGTTACCCTGCACAAATGTGGTAGATGGGAAGCACGCATGGGGCAGTTTCTCGGAAAAAAATATATCTATCTTGGCCTATTCGATAGCGAACTAGAGGCTGCAAGGGCATATGATAGGGCTGCTATAAAGTGCAATGGAAGGGAAGCAGTTACTAACTTTGAGCCCAGCTCATATGAAGGAAAGGTAAATTCTCATGATGAGAATGAAGATAACGGGCAAAGTCTTGATCTTAATTTGGGCATAGCTCCCCCTTCTTTCTCTGAAGAACAAGTCAATAACATTCACAACAATGGGATTGGTTTCCAATATCAGCCTAGCTGGGATGACATCCCTATTGATAGGAGATTTATGTTTGAGCACTCTGCATCAAGATCACTGAATACTCAGCCACCTCATGGATTCTCCATACCATCTCAGCATCCTTCTGCTTGGGGCGGTACTGATTTCTTTCCCATCTACAAGGAAAGAGCAATAGAGAATATGATGGAAGCCAATCCCTTGCAAAATTGGACATGGCAAGTCCAAGGTCATTGTGGCGGGGCAACTCCAATTCCACCTGTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACATTAATGCCATCAGCTGCGGATAATCAAATTCATTTTCCAAACAAGACATTCCTCTACCCTAACTTCCCTCCATCGATCGCCAATTCCGGCACCATATCGCCCTTCTACTAA 1401 0.4918 MLDLNLNADSASGIQMESSGSFNSSLANADTEDSCSYGGADAVAYNFAILKNAVGGDGDAGAAGDDGCVRTIQLFPMVGAGDGVAAEQLCGSSSVLEFETKEDRGGGSATAAEQRMVPQRAQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSSYEGKVNSHDENEDNGQSLDLNLGIAPPSFSEEQVNNIHNNGIGFQYQPSWDDIPIDRRFMFEHSASRSLNTQPPHGFSIPSQHPSAWGGTDFFPIYKERAIENMMEANPLQNWTWQVQGHCGGATPIPPVSAAASSGFPSTLMPSAADNQIHFPNKTFLYPNFPPSIANSGTISPFY* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1406 466 SUPERFAMILY DNA-binding domain 228 287 IPR016177 GO:0003677
Ahy6g1406 466 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Ahy6g1406 466 MobiDBLite consensus disorder prediction 101 137 - -
Ahy6g1406 466 SUPERFAMILY DNA-binding domain 136 195 IPR016177 GO:0003677
Ahy6g1406 466 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 461 - -
Ahy6g1406 466 CDD AP2 137 195 IPR001471 GO:0003700|GO:0006355
Ahy6g1406 466 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 461 - -
Ahy6g1406 466 Pfam AP2 domain 228 278 IPR001471 GO:0003700|GO:0006355
Ahy6g1406 466 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Ahy6g1406 466 SMART rav1_2 229 292 IPR001471 GO:0003700|GO:0006355
Ahy6g1406 466 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
Ahy6g1406 466 CDD AP2 228 288 IPR001471 GO:0003700|GO:0006355
Ahy6g1406 466 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Ahy6g1406 466 PRINTS Ethylene responsive element binding protein signature 268 288 IPR001471 GO:0003700|GO:0006355
Ahy6g1406 466 Gene3D AP2/ERF domain 228 287 IPR036955 GO:0003700|GO:0006355
Ahy6g1406 466 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Ahy6g1406 466 ProSiteProfiles AP2/ERF domain profile. 229 286 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1406 Ahy-Chr6 24786083 24789324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1406 71 331 AP2-EREBP Transcription Factor Family AT4G36920 62.676 7.00e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ahy6g1406 AP2 1.00E-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1406 K09284 - gmx:100797238 658.677