Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1402 ATGGCCGACGGTCCGGCGAGCCCAGGCGGCGGAAGCCACGAGAGCGGTGACCATAGCCCTCGCTCCAACATAAGGGAGCAGGACAGGTTCCTTCCCATCGCTAACATCAGCCGCATCATGAAGAAGGCGCTTCCCGCCAACGGAAAAATCGCCAAGGATGCCAAAGAAACTGTTCAGGAATGCGTCTCCGAGTTTATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGCCAGAGAGAGAAGAGGAAGACTATTAACGGTGATGATTTGCTCTGGGCAATGGCGACTCTCGGTTTCGAGGATTATATTGATCCCTTGAAGATTTACCTCACAAGATACAGAGAGATGGAGGGTGACACCAAGGGTTCAGCAAAGGGTGGAGACGCTTCTGCTAAAAAAGATGTTCAACCAAGTCCTAATGTTCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGCGTTAATTACACTAACTCTCAGGGTCAACATATGATGGTTCCTATGCAAGGTCCAGAGTAG 516 0.5039 MADGPASPGGGSHESGDHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSAKGGDASAKKDVQPSPNVQLAHQGSFSQGVNYTNSQGQHMMVPMQGPE* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1402 171 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ahy6g1402 171 MobiDBLite consensus disorder prediction 119 171 - -
Ahy6g1402 171 MobiDBLite consensus disorder prediction 135 164 - -
Ahy6g1402 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ahy6g1402 171 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 159 - -
Ahy6g1402 171 Gene3D Histone, subunit A 17 151 IPR009072 GO:0046982
Ahy6g1402 171 MobiDBLite consensus disorder prediction 1 27 - -
Ahy6g1402 171 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Ahy6g1402 171 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Ahy6g1402 171 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Ahy6g1402 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Ahy6g1402 171 SUPERFAMILY Histone-fold 27 129 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1402 Ahy-Chr6 24411206 24415437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1402 1 169 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.531 1.67e-89 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ahy6g1402 CBFD_NFYB_HMF 7.70E-28 CL0012