Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1399 ATGGGGAAGACGCGTGGAATGGGAGCTGCCCGTAAGCTGAAGTCCCACCGCAGAAGGCAACGGTGGGCAGACAAATCATACAAGAAATCTCATCTTGGTAATGAATGGAAGAAACCTTTTGCTGGTTCTTCCCATGCCAAGGGTATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAATTCTGCCATTCGTAAATGTGCGAGGGTTCAACTCATCAAGAATGGGAAGAAGATTGCTGCATTTGTACCAAATGATGGTTGCTTAAACTACATTGAAGAGAATGACGAAGTTTTGATAGCTGGATTCGGAAGAAAAGGTCATGCCGTTGGTGATATTCCCGGTGTTAGGTTCAAGGTTGTGAAGGTCTCTGGTGTGTCACTCCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA 429 0.4522 MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1399 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Ahy6g1399 142 MobiDBLite consensus disorder prediction 1 30 - -
Ahy6g1399 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Ahy6g1399 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Ahy6g1399 142 Gene3D - 25 142 IPR012340 -
Ahy6g1399 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Ahy6g1399 142 TIGRFAM uS12_E_A: ribosomal protein uS12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Ahy6g1399 142 Pfam Ribosomal protein S12/S23 31 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Ahy6g1399 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Ahy6g1399 142 MobiDBLite consensus disorder prediction 9 25 - -
Ahy6g1399 142 PANTHER BNACNNG03140D PROTEIN 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1399 Ahy-Chr6 24164166 24166087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1399 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.775 2.17e-96 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1399 K02973 - fve:101303309 286.96