Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1353 ATGAAGAGACAGAGAGAAAATGAAGGTTATTGTTCAGTAGAGAGCATTGATTTGGTGAAATGCCTAATGCTTCTTCCTCTTCTCCAAGAAAGAAGCAACAAGTCATCAACGTCATCAATGCATCATAGAAATGGGTCTGCGGAGTTTGAGTGCAAGACTTGCAACCGCAAGTTCTCTTCGTTTCAAGCACTGGGTGGGCACAGGGCTAGCCACAAGAGGCAGAAGCTAGAAGATGGCGAAGAAGAACTGAAGCAACAAGCCAAATCACTGAGCCTCTGGAACAACCCCAAGATGCACGAGTGCTCCATTTGTGGCCTTAAATTCTCTTTAGGCCAAGCACTCGGTGGTCACATGAGAAAACACAGAGGATTAGCCGAATCATCATCATCATTAATCAACCATGTTATTGAGAAAACCCCCGTTCTTATGAGATCTAACAGCAAGAGGATTACGGGTCTCGATTTGAACTTAACACCTTTCGACCCTCATGATGACTCCTTTGCCAACCCCACAACCATCCCACTTCCTCTTTCTTTCTTCTGA 543 0.4494 MKRQRENEGYCSVESIDLVKCLMLLPLLQERSNKSSTSSMHHRNGSAEFECKTCNRKFSSFQALGGHRASHKRQKLEDGEEELKQQAKSLSLWNNPKMHECSICGLKFSLGQALGGHMRKHRGLAESSSSLINHVIEKTPVLMRSNSKRITGLDLNLTPFDPHDDSFANPTTIPLPLSFF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1353 180 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Ahy6g1353 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Ahy6g1353 180 PANTHER ZINC FINGER PROTEIN ZAT5 1 158 - -
Ahy6g1353 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Ahy6g1353 180 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 158 - -
Ahy6g1353 180 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Ahy6g1353 180 SMART c2h2final6 99 121 IPR013087 -
Ahy6g1353 180 SMART c2h2final6 49 71 IPR013087 -
Ahy6g1353 180 Gene3D Classic Zinc Finger 46 121 - -
Ahy6g1353 180 Pfam C2H2-type zinc finger 99 122 - -
Ahy6g1353 180 Pfam C2H2-type zinc finger 49 74 - -
Ahy6g1353 180 SUPERFAMILY beta-beta-alpha zinc fingers 49 121 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1353 Ahy-Chr6 21192775 21193503 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1353 1 174 C2H2 Transcription Factor Family AT2G37430 43.258 7.99e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy6g1353 zf-C2H2_6 9.50E-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1353 - - aip:107648719 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1495 16 32782158 32782868 Ahy6g1353 6 21192775 21193503 hybridization
Ahy6g1353 6 21192775 21193503 Ahy12g1166 12 31571669 31572379 PCT
Ahy6g1353 6 21192775 21193503 Ahy2g1054 2 29704941 29705656 PCT
Ahy12g1166 12 31571669 31572379 Ahy6g1353 6 21192775 21193503 PCT
Ahy2g1054 2 29704941 29705656 Ahy6g1353 6 21192775 21193503 PCT