Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1307 ATGCTGGACTCAGTTCTGCTGGCGCTGTTCCTGCCGTGCCTGGGCATGAGCGCCGTCTTCATAGTGTACATCTGCCTTCTCTGGTACGCCACCGCACACCACCCCAACCTCCCTCCGCCCCCAGCCAAAACCCTCTCCGTGAAGGGCCTCTCCCCCTCCGACCTTGACAAGCTCCCCAAGGTTACCGGCAAGGACCTGCTGTCCCCTAGCGAATGTGCAGTGTGCCTCGATGACATCGCCCATGAACAAGCTGTTCGGATGGTTCCCGGTTGCAACCATGGCTTTCACCTTGAATGCGCGGATACCTGGCTTTCAGAACACCCTCTGTGTCCGGTTTGTAGAGCCAAACTGGACCTTGAGAATTTGAATTCCTCTGAAAGTGAAAAGAATCCATGCTAA 399 0.5614 MLDSVLLALFLPCLGMSAVFIVYICLLWYATAHHPNLPPPPAKTLSVKGLSPSDLDKLPKVTGKDLLSPSECAVCLDDIAHEQAVRMVPGCNHGFHLECADTWLSEHPLCPVCRAKLDLENLNSSESEKNPC* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1307 132 Pfam Ring finger domain 71 114 IPR001841 -
Ahy6g1307 132 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Ahy6g1307 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 119 IPR013083 -
Ahy6g1307 132 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 132 - -
Ahy6g1307 132 SMART ring_2 72 113 IPR001841 -
Ahy6g1307 132 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 132 - -
Ahy6g1307 132 SUPERFAMILY RING/U-box 63 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1307 Ahy-Chr6 19740405 19741295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1307 1 132 C3H Transcription Factor Family AT5G42200 48.905 1.43e-40 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1307 K19037 - gmx:100817919 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0035 16 327521 328445 Ahy6g1307 6 19740405 19741295 hybridization
Ahy6g1307 6 19740405 19741295 Ahy17g2230 17 108028517 108029843 PCT
Ahy6g1307 6 19740405 19741295 Ahy8g0152 8 2811473 2812807 PCT
Ahy17g2230 17 108028517 108029843 Ahy6g1307 6 19740405 19741295 PCT
Ahy8g0152 8 2811473 2812807 Ahy6g1307 6 19740405 19741295 PCT