LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy6g1300	ATGGCTGAGACCACACCCAATCACACACAAACAGTTTCTGGATGGGCTGCTCATGATTCTTCTGGCAACATAACCCCCTACACTTTCAAAAGAAGAGACAACGGTGTTAATGACGTGAGCATAGAAATCTTGTACTGCGGGATTTGCCACACGGACATTCACTACGTTAAAAATGAATGGGGAATCACTAGGTACCCGGTTGTTCCGGGGCACGAGATCGTTGGGGTGGTAAGCAAGGTGGGGAGGGAAGTGAAGGGATTCAAAGAAGGAGACAGAGTAGGAGTGGGGTGTTTGGCAGCAACATGCTTGGAATGTGAGTATTGCAAGACCGATCAGGAGAACTACTGCGAGAAACTTGAGTTCACTTACAATGGAGTTTTCTGGGATGGTAGCATCACTTATGGTGGCTACTCAAAAATGCTGGTCGCTGATTACAGATACGTGGTACATGTGCCGGAGAATCTGCCAATGGACGCAACGGCACCACTGCTGTGTGCTGGAGTGACGGTGTTCAGTCCCTTGAAAGACCACGGTTTGGTTGAATCGCGAGGGAAAAGCATTGGCATTGTGGGCTTGGGTGGTCTTGGCCACGTGGCTGTCAAGTTTGCCAAGGCCTTTGGACACCATGTCACTGTCATAAGCACTTCTCCTTCCAAAGAGGCGGAGGCTAAGGAGCGTTTGGGTGCCGACCATTTCATAGTCAGCTCCAACCCCAAGCAAATGCAGGGTGCCAAGAGAACCCTTGATTTCATTTTGGACACTGTTTCAGCTGAGCACTCTCTTTTGCCCATTTTGGAATTGCTCAAAGTTAATGGCACTTTGTTTATTGTGGGTGCACCCGACAAGCCATTCCAATTGCCCGCATTCCCATTGATATTTGGGAAGAGATCAATCAAAGGTGGGATCATAGGAGGAATAAAAGAAACCCAGGAAATGTTGGACGTTTGTGGGAAGCACAACATCACATGTGACATTGAATTAATCACTCCAGACAGAATCAACGAAGCTCTTCAACGTCTTGCTAACAATGATGTCCGCTACCGTTTTGTCATTGACATCGCTGCTGCCACCTCTAATAACTAA	1083	0.4774	MAETTPNHTQTVSGWAAHDSSGNITPYTFKRRDNGVNDVSIEILYCGICHTDIHYVKNEWGITRYPVVPGHEIVGVVSKVGREVKGFKEGDRVGVGCLAATCLECEYCKTDQENYCEKLEFTYNGVFWDGSITYGGYSKMLVADYRYVVHVPENLPMDATAPLLCAGVTVFSPLKDHGLVESRGKSIGIVGLGGLGHVAVKFAKAFGHHVTVISTSPSKEAEAKERLGADHFIVSSNPKQMQGAKRTLDFILDTVSAEHSLLPILELLKVNGTLFIVGAPDKPFQLPAFPLIFGKRSIKGGIIGGIKETQEMLDVCGKHNITCDIELITPDRINEALQRLANNDVRYRFVIDIAAATSNN*	361

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy6g1300	360	Gene3D	-	166	323	-	-
Ahy6g1300	360	PANTHER	CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED	1	356	-	-
Ahy6g1300	360	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	155	321	IPR036291	-
Ahy6g1300	360	SUPERFAMILY	GroES-like	18	181	IPR011032	-
Ahy6g1300	360	CDD	CAD1	14	352	-	-
Ahy6g1300	360	Pfam	Zinc-binding dehydrogenase	194	315	IPR013149	-
Ahy6g1300	360	Gene3D	-	15	353	-	-
Ahy6g1300	360	Pfam	Alcohol dehydrogenase GroES-like domain	37	150	IPR013154	-
Ahy6g1300	360	PANTHER	ALDEHYDE REDUCTASE	1	356	-	-
Ahy6g1300	360	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	70	84	IPR002328	GO:0008270\|GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy6g1300	Ahy-Chr6	19629024	19630614	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy6g1300	14	354	Monolignol Biosynthesis Gene Families	AT2G21730	57.310	1.09e-144	412

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy6g1300	K00083		-	gmx:100820588	623.239

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g0041	16	364738	366524	Ahy6g1300	6	19629024	19630614	hybridization

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