Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1299 ATGGTTAACACAACGGAATCTTCCTCTAACCACCACTCCCCGCCGATGACGGCGGTCCCCCCTGAATCCGACAGCCCTAAGTTCCCGCGAAAAAATCTCCCTTCTCCATGGGCTCAGGTTGTCCGCGGCGCCGAACCCGAATCCACCGCCGGGACTCCCCAATCGCCGCCGCTGCCGTCGTCTGCCTCCTCCTCCTCCTCCCTTGCTGCCAGCGTTGCGTCAGTCCCGGAGCAGCTGCCTTCTTCAGATTCCTCCTCCCCAAAGGCCGTAGCTGCCTCGCCGCTGGTGGACAACAGGAGTGTTGTGACAGCTCCTCCCGATAGCTCCGATGGCGGTGAGGGCAATGCGGGTAGGTCCAAGAAACCCGCGTGGAATAAACCTTCAAACGGGGTCGTATCTGAGGCCGGTCTTGTGATGGGAGGGTCGTGGCCTGCTTTGTCTGAATCCACCAAAGGGACTCCCAAATTGGCCCCCGAATCATCCTCCAAGACTGCCTCAGATGCATCGCTCTCCACATCTCAGGGTCCTGTAACTTCGAACGCTCCCCAAAGACAAGCTACTAGCCATGCAAAACCCAACTCTGCAACAACTTATAACATACCTAATAGGCAAAGACCAATGAAGCGTGGAGGTGGCAGCAACATTGGGTCTGGTCCTTCTTCAAGCGGCTTTCCCAATGTTGCGCCACCTCCACCACCCTTTCCTGTATACCCAGTTCCTGCACCAGCAATTGGTTACAGTAATGTCATGCCGGGAGCTCCAGACCATTCTCCAAGAGATCATTATCGTCGTAATACCTGGGATGCAAGACCACCTGTTGGGAATTTTGTGCCTCCGATGACTGAACATCGGGGTTCATCTGAACATCGGGGTTCATCTCGCCGGGGTAATTTTGGGTCCCATCCTAGGGGAGATGGCTCCTATCATAATAATTATGGTAGTAGGCGTGATCATGATCGTGCCAATTATGGGAATGCTAGAGATGCTCATGTACACCAACCAGGGGGAATATTGAGGCACCCACCACCGAATGCTCCTTCATTTGTTAACCCCGCACATGTTGGATCCTCACCCTATGCTAACCACATGGGCTTCCATGGTCCGGACTTATTATATGTTTCACCAGTACAAGTAGATCCCATGAGGGGCATGCCATTCTTTCCTTCCACTCCTCTTCCTCCTTCTCCTCCTCCTCCTCCTCCTACGATGTTCTTCCATGCAGAAACTTCTTCTCCTCTTAACAATATGATTATCAAGCAAATTGAATACTACTTTAGTGATGCTAATTTAGTAAAAGATGAATATTTAAGGTCCAACATGGATGAACAGGGTTGGGTTCCCATTACGTTGATAGCAAACTTTCCTCGTGTTAAAAATTTAACAAGTAACATCCCATTGATACTGGATTCATTAAGAGGTTCAGCTATTGTCGAAGTGCAAGGTGACAAGTTAAGGAGGCATAATGAGTGGATGAGATGGCTGCCAGCGACTCATCTTCGGTCAGATTCCAGTTCAATATCTACTGGTGGACCGAATTTCAATAACCTTGCAGCTAATTTTCAAACAATCACTTTGGAAGAAGCAGCTAAAATTGAAGGTACAGTCGAGATGTCTGATGTTACTCAAATCTCAAATGGTGATGATACTGCTGCTCTTGTCAACAAGAATTAG 1671 0.4967 MVNTTESSSNHHSPPMTAVPPESDSPKFPRKNLPSPWAQVVRGAEPESTAGTPQSPPLPSSASSSSSLAASVASVPEQLPSSDSSSPKAVAASPLVDNRSVVTAPPDSSDGGEGNAGRSKKPAWNKPSNGVVSEAGLVMGGSWPALSESTKGTPKLAPESSSKTASDASLSTSQGPVTSNAPQRQATSHAKPNSATTYNIPNRQRPMKRGGGSNIGSGPSSSGFPNVAPPPPPFPVYPVPAPAIGYSNVMPGAPDHSPRDHYRRNTWDARPPVGNFVPPMTEHRGSSEHRGSSRRGNFGSHPRGDGSYHNNYGSRRDHDRANYGNARDAHVHQPGGILRHPPPNAPSFVNPAHVGSSPYANHMGFHGPDLLYVSPVQVDPMRGMPFFPSTPLPPSPPPPPPTMFFHAETSSPLNNMIIKQIEYYFSDANLVKDEYLRSNMDEQGWVPITLIANFPRVKNLTSNIPLILDSLRGSAIVEVQGDKLRRHNEWMRWLPATHLRSDSSSISTGGPNFNNLAANFQTITLEEAAKIEGTVEMSDVTQISNGDDTAALVNKN* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1299 556 PANTHER LA-RELATED PROTEIN 1B 44 539 - -
Ahy6g1299 556 MobiDBLite consensus disorder prediction 48 91 - -
Ahy6g1299 556 MobiDBLite consensus disorder prediction 1 16 - -
Ahy6g1299 556 MobiDBLite consensus disorder prediction 146 203 - -
Ahy6g1299 556 PANTHER LUPUS LA PROTEIN-RELATED 44 539 IPR045180 -
Ahy6g1299 556 MobiDBLite consensus disorder prediction 310 326 - -
Ahy6g1299 556 MobiDBLite consensus disorder prediction 1 237 - -
Ahy6g1299 556 Gene3D - 405 494 IPR036388 -
Ahy6g1299 556 SUPERFAMILY "Winged helix" DNA-binding domain 405 495 IPR036390 -
Ahy6g1299 556 SMART la 411 487 IPR006630 -
Ahy6g1299 556 Pfam La domain 417 472 IPR006630 -
Ahy6g1299 556 MobiDBLite consensus disorder prediction 250 346 - -
Ahy6g1299 556 CDD LAM 415 486 - -
Ahy6g1299 556 ProSiteProfiles La-type HTH domain profile. 407 496 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1299 Ahy-Chr6 19620345 19624713 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1299 K18757 - gmx:100785504 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0042 16 371942 376175 Ahy6g1299 6 19620345 19624713 hybridization
Ahy6g1299 6 19620345 19624713 Ahy17g2236 17 108273863 108276496 PCT
Ahy6g1299 6 19620345 19624713 Ahy8g0146 8 2722468 2725188 PCT
Ahy17g2236 17 108273863 108276496 Ahy6g1299 6 19620345 19624713 PCT
Ahy8g0146 8 2722468 2725188 Ahy6g1299 6 19620345 19624713 PCT