Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1273 ATGGCCCTCCTAGCACTCTTGCCTGAACACTCCCTTCCCAACAACAACAATGGTAAGAATAAGATTAATAATAAGCAGAAGCAGAAACACAAGCAGAATCAAAAGCAGAAGCAGAAAGAAAAACAAGGTTCTTCTTCTTCATCTTCATGGGAGCAAATCAAGAACTTGATATCTTGCAAACAAGTTGAAGGGTCAAGAGTGCATGATCCTTCATCGTCAAAGAGCATGATGGGTTCATCTTGCAGCTCCATATGCAGCTTCAGAGATGTTGTTCATGGAAACACTAGAGTTGTTCACAGAGCTGATAACTCTTCACCTGAGAGTAGCTCACTTGGGCAGCAAGAAACTGGTTTGTTGAGTAGAAAACCTGCCGCAAAATCATCAAGAAGGTCATCTGGGAAATCCAATGGTGGAGCAACCTACACGCCATCATCTTCTAAAGGGATGCAGTTTAGGAAGCTGTCTGGGTGTTATGAATGTCACATGATCATTGACCCTAGCAGGCTACCAATTCCAAGGAGCAGCGTGTGTGCTTGTTCAGAGTGTGGAGAGGTGTTCCCTAAGATGGAAAGCTTAGAGCTTCATCAAGCTGTTCGTCATGCTGTTTGGGAGCTGGGTCCAGAGGATTCAGGTCGGAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTAAAGAAGGACAACTCGATATGCAAGATCGAACGGATACTGAAGGTCCAGAACAGTCAACGCACCATCCAACGGTTTGAGGAGTGCAGGGACAGCGTGAAGTCGCGTGCACAGAATAGTAGCAAGAAAAACCCCAGGTGCGCAGCCGATGGCAACGAACTCTTGAGGTTCCATTGCACCACATTGACCTGCCCACTTGGGGCACAGGGATCCACTGCCCTTTGCACTGCCATTCCCGCTTGTGGCGTATGCACTGTCATAAGGCACGGGTTTCAAGGCGGTGGAAAGGGGGTGAAGACCACGGCCAGTAGCGGTAGGGCACATGACTCGCTGGCAGGGCATTGTGGCGCCCCAAGGGCAATGTTGGTTTGCCGTGTCATTGCTGGCAGGGTCAGGCGCGTGCCAGAGGACGCGCCGCCAGAGGACGACGGAGTCTCGGCTAGTGGGGGCTATGATTCTATTGCAGGCAGTGTCGGGATCTACTCTAACCTTGAAGAGTTGGTTGTTTTCAATCCACGCGCCATCCTACCCTGTTTTGTGGTTGTTTACAAGGTGCTTTCTTGTTGA 1236 0.4935 MALLALLPEHSLPNNNNGKNKINNKQKQKHKQNQKQKQKEKQGSSSSSSWEQIKNLISCKQVEGSRVHDPSSSKSMMGSSCSSICSFRDVVHGNTRVVHRADNSSPESSSLGQQETGLLSRKPAAKSSRRSSGKSNGGATYTPSSSKGMQFRKLSGCYECHMIIDPSRLPIPRSSVCACSECGEVFPKMESLELHQAVRHAVWELGPEDSGRNIVEIIFKSSWLKKDNSICKIERILKVQNSQRTIQRFEECRDSVKSRAQNSSKKNPRCAADGNELLRFHCTTLTCPLGAQGSTALCTAIPACGVCTVIRHGFQGGGKGVKTTASSGRAHDSLAGHCGAPRAMLVCRVIAGRVRRVPEDAPPEDDGVSASGGYDSIAGSVGIYSNLEELVVFNPRAILPCFVVVYKVLSC* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1273 411 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 33 410 - -
Ahy6g1273 411 Gene3D - 202 408 - -
Ahy6g1273 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 201 IPR013087 -
Ahy6g1273 411 SUPERFAMILY ADP-ribosylation 202 407 - -
Ahy6g1273 411 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 33 410 - -
Ahy6g1273 411 Coils Coil 22 42 - -
Ahy6g1273 411 ProSitePatterns Zinc finger C2H2 type domain signature. 177 200 IPR013087 -
Ahy6g1273 411 MobiDBLite consensus disorder prediction 60 79 - -
Ahy6g1273 411 MobiDBLite consensus disorder prediction 1 50 - -
Ahy6g1273 411 MobiDBLite consensus disorder prediction 99 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1273 Ahy-Chr6 19211549 19214871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1273 1 409 C2H2 Transcription Factor Family AT1G75710 59.140 3.36e-168 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy6g1273 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0066 16 583189 586906 Ahy6g1273 6 19211549 19214871 hybridization