Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1247 ATGGCAGGTTTATTCTCTCTAGGTCCACATCATAGCAAACAAGAAGAACAAGATCAAGAAGAAAACAACAACAACAACAGCAACATCCAATTGCTATTGAGAAACGAAGAGATCTACACCAATAGCAGCACCACCAACACCAACACCAACAGAGGGTTCGAGATATGGCCTCATCATCATCAACCGAGCTACTACTCCTTCGGTTTGGGTCCATCTAGTGAGAGAAACACCACCACCACAAACCTAAACGACGACGTTTCGGTGTCTTTCTCTGATGAGTCTAATCGGTTCGGGTTCACCGTGATGAGATCTTCTTCTTCTGGATCGGGTTTAGGAAGCGGCACCAATTGCCAAGACTGCGGTAACCAAGCCAAGAAAGACTGCCTCCACCTTCGCTGCCGAACCTGCTGCCGAAGCCGAGGGTTTCAATGTTCTACTCACGTCAAAAGCACCTGGGTTCCTGCTGCCAAACGACGCGAGCGCCAACACACTCTCGCGTCGTTACAGCAGCAGCAACCCGGGAGAGCAGGAGAAGGAGAAGGAGGAGGCGATGTTCACTCTAGACGAAGTAGAGAAGCCTCCGCTTGTGTTCCCATGCCGATTACTACTACAGGGTTGGAACTAGGGCAATTCCCTCCGGAGTTGAACTCACCGGCGGTGTTCCGGTGCGTCAAAGTCAGCCCAATGGACGCACCTGATGAGAGGTACGCGTATCAAACGGCTGTCAATATAGGAGGCCATGTTTTCAAGGGGATTCTCTACGATCAAGGTCCAGATGGTCCTTTCGCCACCAATGCCGCCGCCGCCGGTGAAGGTTCCTCCCATGGAGGAGGTGAGCCTCATCATCAACAACTCAGTCTCATAACAACCACCAGCGGTGCCGGCATCACATTTGACCCTTCACAGCTTTATCCGGCGCCGATGAATGCTTTCATGGCCGGTACGCAATTCTTTCCGCCCCCGAGAACCTAG 972 0.5206 MAGLFSLGPHHSKQEEQDQEENNNNNSNIQLLLRNEEIYTNSSTTNTNTNRGFEIWPHHHQPSYYSFGLGPSSERNTTTTNLNDDVSVSFSDESNRFGFTVMRSSSSGSGLGSGTNCQDCGNQAKKDCLHLRCRTCCRSRGFQCSTHVKSTWVPAAKRRERQHTLASLQQQQPGRAGEGEGGGDVHSRRSREASACVPMPITTTGLELGQFPPELNSPAVFRCVKVSPMDAPDERYAYQTAVNIGGHVFKGILYDQGPDGPFATNAAAAGEGSSHGGGEPHHQQLSLITTTSGAGITFDPSQLYPAPMNAFMAGTQFFPPPRT* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1247 323 MobiDBLite consensus disorder prediction 155 196 - -
Ahy6g1247 323 MobiDBLite consensus disorder prediction 1 24 - -
Ahy6g1247 323 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 321 - -
Ahy6g1247 323 Pfam Domain of unknown function (DUF702) 114 259 - -
Ahy6g1247 323 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 321 IPR007818 GO:0003700|GO:0006355
Ahy6g1247 323 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 210 258 IPR006511 -
Ahy6g1247 323 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 116 158 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1247 Ahy-Chr6 18606309 18608062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1247 1 323 C2H2 Transcription Factor Family AT1G75520 41.918 6.72e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ahy6g1247 DUF702 2.90E-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1247 - - gmx:100807290 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0098 16 948048 950013 Ahy6g1247 6 18606309 18608062 hybridization
Ahy6g1247 6 18606309 18608062 Ahy17g2324 17 112188418 112191351 PCT
Ahy6g1247 6 18606309 18608062 Ahy8g0092 8 1559607 1562513 PCT
Ahy17g2324 17 112188418 112191351 Ahy6g1247 6 18606309 18608062 PCT
Ahy8g0092 8 1559607 1562513 Ahy6g1247 6 18606309 18608062 PCT