Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1242 ATGATCAAAGCAAGGATGATGGGAACTGATCAGGAGAGAAAGCAATTGATGAGGAAGCAAGCACAAGCCAATTCAAGAAAGGGTTGTATGAGGGGAAAAGGAGGCCCTCAGAATGCAACATGCACCTACAAAGGTGTAAGGCAAAGGATTTGGGGCAAATGGGTTGCCGAGATTCGCGAACCACGACGTGGTTCGCGTATCTGGCTTGGGACGTTCAATACGTCCCATGAAGCCGCCTTGGCTTACGATGCTGCGGCGCGTAAGCTTTACGGCCATGATGCTAAGCTCAATCTCCCAGACCTTCAACCCTCTATCTCCACAACTCAGGATATTCAAAGAGACAACCTTCTTCAACAACAATCTCACATGATGATTAATCAGCACAACATTGGCACCTCTTTCAACAACAACAACAATAACCTCAAACCTTTGGTGCCCATGGCTGAGGTTGGTGTTACACCAATTTACACCAATGAAGGCATTATGTCTCTTCCCTTAAGAGATGATATCAACACCTACACCACCATCAACAACATCAATAACTTCAACACCAAACCTATAATTTTGGAAAGCTTCCGAAACCCAACAAAGCCTATGGACAATAATATTATCAATAATAATAATGTAGAGAAGCCAAGTTCCTCATTTTCTGAGCCAGATTTTTATGATGATTCCATTTGGACAGAAGCTGCTGCATCTTTGAACTTTCCTATGCTTTCAGATGCTAATAATGGTTTTTATGAAGCTGGGGATATGGCTTGGATATGCAAGGTTGATGGTGAATAA 786 0.4288 MIKARMMGTDQERKQLMRKQAQANSRKGCMRGKGGPQNATCTYKGVRQRIWGKWVAEIREPRRGSRIWLGTFNTSHEAALAYDAAARKLYGHDAKLNLPDLQPSISTTQDIQRDNLLQQQSHMMINQHNIGTSFNNNNNNLKPLVPMAEVGVTPIYTNEGIMSLPLRDDINTYTTINNINNFNTKPIILESFRNPTKPMDNNIINNNNVEKPSSSFSEPDFYDDSIWTEAAASLNFPMLSDANNGFYEAGDMAWICKVDGE* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1242 261 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Ahy6g1242 261 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 18 243 - -
Ahy6g1242 261 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Ahy6g1242 261 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Ahy6g1242 261 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Ahy6g1242 261 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Ahy6g1242 261 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 18 243 - -
Ahy6g1242 261 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Ahy6g1242 261 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Ahy6g1242 261 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1242 Ahy-Chr6 18483539 18485883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1242 2 100 AP2-EREBP Transcription Factor Family AT1G75490 69.697 2.05e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy6g1242 AP2 4.00E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1242 - - adu:107493032 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0102 16 1009161 1011665 Ahy6g1242 6 18483539 18485883 hybridization
Ahy6g1242 6 18483539 18485883 Ahy17g2332 17 112602934 112604177 PCT
Ahy6g1242 6 18483539 18485883 Ahy8g0086 8 1474005 1474718 PCT
Ahy17g2332 17 112602934 112604177 Ahy6g1242 6 18483539 18485883 PCT
Ahy8g0086 8 1474005 1474718 Ahy6g1242 6 18483539 18485883 PCT