Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1206 ATGGAGGGAGAGAGACACTACAGAGGGATTCGTAGGAGGCCATGGGGCAAATTCGCTGCTGAGATTAGAGACCCAACCAGGAAAGGGACTCGTATTTGGCTTGGAACCTTTGACACTGCTGAACAAGCTGCTAGAGCCTATGACGCTGCTGCTTTCCATTTTCGTGGTCATAGAGCCATTCTCAATTTCCCAAATGACTATGTCGCTGCTTCTTCTTCTTCTTCCGGTTCTTCTAGAAGATCAAAACAACAGCAAGAACATATGCATCAACTTGAGTTGGAATACTTTGACAACAAGTTGTTGGAAGAACTCCTTCAGGGGCAAGATGCTAGCTCCACAGCTGGAAACTGCATTCTGTAA 360 0.4611 MEGERHYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNDYVAASSSSSGSSRRSKQQQEHMHQLELEYFDNKLLEELLQGQDASSTAGNCIL* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1206 119 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Ahy6g1206 119 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Ahy6g1206 119 ProSiteProfiles AP2/ERF domain profile. 6 64 IPR001471 GO:0003700|GO:0006355
Ahy6g1206 119 MobiDBLite consensus disorder prediction 69 88 - -
Ahy6g1206 119 Pfam AP2 domain 6 57 IPR001471 GO:0003700|GO:0006355
Ahy6g1206 119 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Ahy6g1206 119 SMART rav1_2 6 70 IPR001471 GO:0003700|GO:0006355
Ahy6g1206 119 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Ahy6g1206 119 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Ahy6g1206 119 PANTHER DNA-BINDING DOMAIN 6 104 IPR044808 GO:0003700|GO:0009873
Ahy6g1206 119 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1206 Ahy-Chr6 17765902 17766630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1206 7 109 AP2-EREBP Transcription Factor Family AT3G23230 52.991 1.87e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy6g1206 AP2 6.00E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1206 - - adu:107493082 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0127 16 1264146 1264899 Ahy6g1206 6 17765902 17766630 hybridization
Ahy6g1206 6 17765902 17766630 Ahy12g0915 12 18377675 18378587 PCT
Ahy6g1206 6 17765902 17766630 Ahy2g0783 2 14287336 14288181 PCT
Ahy12g0915 12 18377675 18378587 Ahy6g1206 6 17765902 17766630 PCT
Ahy2g0783 2 14287336 14288181 Ahy6g1206 6 17765902 17766630 PCT