Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1200 ATGGCTTGTTCAAGTGGAAATGGAACAAGTAGTGGTGGATCAGGTTCACCGTGTGGGGCGTGCAAGTTTCTGAGGAGGAAGTGTGCTGCAGATTGCATATTTGCACCATACTTCTGCTCAGAACAAGGGCCTGCAAGATTTGCAGCCATACATAAGGTCTTTGGTGCAAGCAACGTTTCCAAGCTCTTGCTTCATATTCCCGCTCATGATCGCTGTGAGGCTGTTGTCACCATTGCTTATGAGGCTCAAGCTCGTATCAGAGACCCCGTTTATGGTTGCGTCTCTCACATTTTCGCATTACAACAACAGGTAGCATGCTTGCAGGCACAATTGATGCAAGTGAAGGCTCAGCTGGCACAGAATCAAATAGAGAATCAATGGCCAGGGAATGTTGGTGGAGCCATGAACAATCCATTTGGTCACACCAATTACATGAACCCTCCTATATCTCCTCAGAGTTCACTTGAATCAATTGATCATCACAGCAGCAGCATCATTGATATGCATGACACAAGACCAGAGGATTTCAACTCATTCCAACAACAACAACAACAAGCTTCTTCTAAGAGAAGATCATATAACAACAACAACAACAATGACCTGGGTGAGCTGCAAGAGTTGGCACTTAGGATGATGAGGAACTAA 645 0.4512 MACSSGNGTSSGGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNQIENQWPGNVGGAMNNPFGHTNYMNPPISPQSSLESIDHHSSSIIDMHDTRPEDFNSFQQQQQQASSKRRSYNNNNNNDLGELQELALRMMRN* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1200 214 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
Ahy6g1200 214 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Ahy6g1200 214 Coils Coil 97 124 - -
Ahy6g1200 214 MobiDBLite consensus disorder prediction 176 203 - -
Ahy6g1200 214 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 213 - -
Ahy6g1200 214 MobiDBLite consensus disorder prediction 176 206 - -
Ahy6g1200 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 10 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1200 Ahy-Chr6 17650960 17652469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1200 4 214 AS2 family AT2G42430 56.048 1.29e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy6g1200 LOB 8.40E-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1200 K13944 - gmx:100801508 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0132 16 1335591 1337776 Ahy6g1200 6 17650960 17652469 hybridization
Ahy6g1200 6 17650960 17652469 Ahy12g0862 12 16709747 16712492 PCT
Ahy6g1200 6 17650960 17652469 Ahy2g0732 2 12880731 12882862 PCT
Ahy12g0862 12 16709747 16712492 Ahy6g1200 6 17650960 17652469 PCT
Ahy2g0732 2 12880731 12882862 Ahy6g1200 6 17650960 17652469 PCT