Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1195 ATGGAAGGGAAGTATTATGTGGCAAGAAACAAGAAGAAGCATCAGAAAGAGGAGAAGAATAACAATAATAATACAAGGTTTGAAATGGAGGAGCAGCATCGTAGTAGTATTTGTTCATCATCATGGCCTGGGAGGAACTATGGGTGTAGCTTTTGCAAGAGAGAGTTCAAATCCGCACAAGCATTGGGTGGACACATGAATGTTCATAGAAGAGATAGGGCAAGATTGAGATCATCATCATCATCATCAATATGGCTTTCTTCCTCTTCTGATAAACCTAATAAACCTAACCCTAGCAGCATCCTGAAACCCAATACTAAGAACAACCCAATAATACCTTCCTCTTCATCTCTTTATTATAGCCCTAGTAGCATTACTTTGTGCTCTTATTCTCCTTCAGCTTCCACAAGTAGCTGCGATAAGAAACCAAGACTCATCACATCACAGCTTCTTCCTCCCCCTCAAACGATCAGTAACAACACCACAGTCACAGCAAGGTGGAGTAGTAATTCTATAATGGAAGATGATGATGAGCACAACCACAACATCACCTTGGAATTGGGAATAGGGTTGCTTAAGCACCCAACTAACAACTTAGATTTGGAGCTTCGATTAGGCCAATGA 624 0.4087 MEGKYYVARNKKKHQKEEKNNNNNTRFEMEEQHRSSICSSSWPGRNYGCSFCKREFKSAQALGGHMNVHRRDRARLRSSSSSSIWLSSSSDKPNKPNPSSILKPNTKNNPIIPSSSSLYYSPSSITLCSYSPSASTSSCDKKPRLITSQLLPPPQTISNNTTVTARWSSNSIMEDDDEHNHNITLELGIGLLKHPTNNLDLELRLGQ* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1195 207 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Ahy6g1195 207 MobiDBLite consensus disorder prediction 78 109 - -
Ahy6g1195 207 Pfam C2H2-type zinc finger 47 71 - -
Ahy6g1195 207 Gene3D Classic Zinc Finger 39 97 - -
Ahy6g1195 207 SUPERFAMILY beta-beta-alpha zinc fingers 44 73 IPR036236 -
Ahy6g1195 207 MobiDBLite consensus disorder prediction 64 109 - -
Ahy6g1195 207 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 9 206 - -
Ahy6g1195 207 PANTHER OS07G0101800 PROTEIN 9 206 - -
Ahy6g1195 207 MobiDBLite consensus disorder prediction 1 29 - -
Ahy6g1195 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1195 Ahy-Chr6 17582813 17583875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1195 31 206 C2H2 Transcription Factor Family AT3G23130 38.710 1.58e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy6g1195 zf-C2H2_6 8.40E-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1195 - - adu:107493056 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0136 16 1388758 1389375 Ahy6g1195 6 17582813 17583875 hybridization
Ahy6g1195 6 17582813 17583875 Ahy12g0854 12 16501026 16502242 PCT
Ahy6g1195 6 17582813 17583875 Ahy2g0726 2 12577953 12578639 PCT
Ahy12g0854 12 16501026 16502242 Ahy6g1195 6 17582813 17583875 PCT
Ahy2g0726 2 12577953 12578639 Ahy6g1195 6 17582813 17583875 PCT