Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1190 ATGTCGTCGGAAGAGCCAACCGTGGCCGTAGAGCAACCTGCAGCTGAGCCCGAAGCAACCGCCGAGCCACCTCCGGAGGCAGAGCCCGAGAACCCAACTCCCAAGCCCAAGAAGGCCGCTAAGGAGCCCAAGCCCAAAAAACCCGCGGCTCCTAGATCCCGAAATCCCTCTCACCCTCCCTACGAAGAGATGGTTAAGGACGCGATTGTGACGTTGAAGGAGAAAAACGGTTCCAGTCAATACGCGATTCAGAAGTTCGTAGAAGAGAAGCAGAAGCAGCTACCTTCCAACTTCAGGAAGCTCTTGTTGTATCATTTGAAGAAGCTCGTTTCTTCTGGAAAGCTCGTTAAGGTCAAAGGTTCCTTCAAGCTTCCTCCGGTCAGGTCTGCAGCTCCCAAGCCAGCTGCTGCTGCCCCCGCCAAGAAGAAGGCTGCAGCTGCTAAGCCCAAACCAAAGCCCAAGCCCAAAGCTAAGCCTGCTTCTAAGGCCAAGGACACCAAAACTACTAAGTCAGCAGCAGCCAAAGCACCTGCCAAGGCCAAGCCCGCTGCAAAGCCCAAGCCCAAGGCCAAGCCAGCTGCTAAACCCAAGGCGGTTGCTGCTAAGACCAAGGCAGCTCCGGCCAAGTCTAAGGCCAAGGCTAAGACGGCGCCAGCTGCAAAGCCGAAGGCAGCTGCGAAGTCTAAACCGGCTGCTAAGCCCAAGCCCAAGCCCAAAGAGAGGCCCTCCAAGGCTTCTAGAACGTCGACGAGAACTTCACCGGGGAAGAAAGTCCCTGCCGCTAAACCTGCGGCGAAGAAGGCAGCTCCCGCGAAGAAAGCCCCAGCAAAGGGTGCAAAGGCGAAGACCGTGAAATCTCCTGCGAAGAAGGCGACGACGGCGAGAAGGGGGAGAAAGTGA 900 0.5689 MSSEEPTVAVEQPAAEPEATAEPPPEAEPENPTPKPKKAAKEPKPKKPAAPRSRNPSHPPYEEMVKDAIVTLKEKNGSSQYAIQKFVEEKQKQLPSNFRKLLLYHLKKLVSSGKLVKVKGSFKLPPVRSAAPKPAAAAPAKKKAAAAKPKPKPKPKAKPASKAKDTKTTKSAAAKAPAKAKPAAKPKPKAKPAAKPKAVAAKTKAAPAKSKAKAKTAPAAKPKAAAKSKPAAKPKPKPKERPSKASRTSTRTSPGKKVPAAKPAAKKAAPAKKAPAKGAKAKTVKSPAKKATTARRGRK* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1190 299 MobiDBLite consensus disorder prediction 31 49 - -
Ahy6g1190 299 PANTHER HISTONE H1 168 299 - -
Ahy6g1190 299 MobiDBLite consensus disorder prediction 1 67 - -
Ahy6g1190 299 Pfam linker histone H1 and H5 family 58 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy6g1190 299 PANTHER HISTONE H1.1 2 198 - -
Ahy6g1190 299 MobiDBLite consensus disorder prediction 117 299 - -
Ahy6g1190 299 Gene3D - 52 130 IPR036388 -
Ahy6g1190 299 PANTHER HISTONE H1 2 198 - -
Ahy6g1190 299 CDD H15 56 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy6g1190 299 SUPERFAMILY "Winged helix" DNA-binding domain 54 136 IPR036390 -
Ahy6g1190 299 PANTHER HISTONE H1.1 168 299 - -
Ahy6g1190 299 PRINTS Histone H5 signature 172 189 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ahy6g1190 299 PRINTS Histone H5 signature 44 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ahy6g1190 299 PRINTS Histone H5 signature 142 156 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ahy6g1190 299 PRINTS Histone H5 signature 194 213 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ahy6g1190 299 PRINTS Histone H5 signature 71 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ahy6g1190 299 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy6g1190 299 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1190 Ahy-Chr6 17458366 17459752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1190 62 152 Single Myb Histone (SMH) Gene Family AT1G49950 35.106 3.88e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1190 K11275 - pvy:116113303 131.724