Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1168 ATGAATACTTGTTTTCATTCCCTGGATAAGATAACACCATGGAGAGGTGACTGGAGAATAAGAGTCAGAATTAACAGGGTATGGTCTGCTCCATATGGTGTTCCAACAAGAGATGGCAATCTGATACACATGGTGTTAATGGATGATAAGTTAACAAAAATTGAGGGAACTATCACAGAGTCTCTAATTCCATATTTTAATGAAGTTCTAGAAAAAAGAAATGTTTATGTGATTGCACATTTTACTGTGGTTCCAAACTCTGGGTTAACTAGGTTGACACAACACCGCTTTAGAATTATTTTTCATAGCAAAACAATTGTTGTACCAACCATGTCTATTGGTATGCCCAATGCTGCATTTAAGTTTACTTCAATTGATGAAGTTGTTGAGAAGAGATGTAATGAAGATTTCTTGATAGATTTCGTTGGGTTCATAGTTGGTGTACGTCAAGAAACTGATATTGGTTCACATGGGGAGAGAATGAAAGTTATAATCTTGGAAGTTGTTTCAGACGGGAAGAAGAAGATACAGTGTAATGTTATTGGAAGATCGTGTGAGGTATTTGATTTGTCTATTTTAAAGAAATATCAAAGACCACCAGTTGTGGTGCTAGAGGCTTTCAAAATTAAAGTCCTTGGAGATTATGTGTGCCTCCAAAATGTGATTAATATCTCTACAGTTCTTATAAATCCTGATATGTACGAAAGTGTGGAGTTTCTTAGCAGATTTAATGTTGCATGCTACGAGTTTTCAAGATTTATTCCCATTGTATCTGGTTATTTAGTAGCCGGTGTTGGTGATGGTTTCGTTGACTGGAGAGCTGTTCGGTCTATTGAACAACTAAAGAAACACAGTCAGGATGGAATTTTCTATGTTGTGGGAACAGTTACAGAGGTTGTTGATGATCCGAATTGGTGGTACCATTCCTGTGTTTGTGGAAATGCTGTTGTTGCTAATGATAATAGTTATCATTGTGATATTTGTGACTCATGTGTGGAACATGTGGTTTTAAAGTATAGAATAACTGTCATTGTTGATGATGGAACATCATCTGCAGCATTCGCACTTGTTGATAATGCTGCAACAAAATTATTTGGGAAAACCTGTGCCGAAGCTTTCTTGCATATAGAGAAAGAATTACACTCAGATTGTAATGATGTCTCAATGGAATTTATCCATTGCCCAATTTTCAACCCAATATATCCAACTTATTCGGCACCTTCATGTATTCAAAATTTGAGATGTCAGATTAGTTCCTCTGGTTTGATTGAAACTGAACCTATTGGGAGATGCTTGGGGAGATTATCTCATTATGCTTTTCTCAACGAATTCCTGAAATTGAATCACTGA 1350 0.3622 MNTCFHSLDKITPWRGDWRIRVRINRVWSAPYGVPTRDGNLIHMVLMDDKLTKIEGTITESLIPYFNEVLEKRNVYVIAHFTVVPNSGLTRLTQHRFRIIFHSKTIVVPTMSIGMPNAAFKFTSIDEVVEKRCNEDFLIDFVGFIVGVRQETDIGSHGERMKVIILEVVSDGKKKIQCNVIGRSCEVFDLSILKKYQRPPVVVLEAFKIKVLGDYVCLQNVINISTVLINPDMYESVEFLSRFNVACYEFSRFIPIVSGYLVAGVGDGFVDWRAVRSIEQLKKHSQDGIFYVVGTVTEVVDDPNWWYHSCVCGNAVVANDNSYHCDICDSCVEHVVLKYRITVIVDDGTSSAAFALVDNAATKLFGKTCAEAFLHIEKELHSDCNDVSMEFIHCPIFNPIYPTYSAPSCIQNLRCQISSSGLIETEPIGRCLGRLSHYAFLNEFLKLNH* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1168 449 Gene3D - 5 111 IPR012340 -
Ahy6g1168 449 PANTHER REPLICATION FACTOR A 1, RFA1 9 371 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy6g1168 449 CDD RPA1_DBD_A_like 19 107 - -
Ahy6g1168 449 SUPERFAMILY Nucleic acid-binding proteins 280 377 IPR012340 -
Ahy6g1168 449 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 9 371 - -
Ahy6g1168 449 Gene3D - 114 251 IPR012340 -
Ahy6g1168 449 SUPERFAMILY Nucleic acid-binding proteins 120 246 IPR012340 -
Ahy6g1168 449 CDD RPA1_DBD_B_like 140 243 - -
Ahy6g1168 449 CDD RPA1_DBD_C 279 383 IPR013955 -
Ahy6g1168 449 Pfam Replication factor-A C terminal domain 290 372 IPR013955 -
Ahy6g1168 449 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Ahy6g1168 449 Pfam Domain of unknown function DUF223 44 138 IPR003871 -
Ahy6g1168 449 Gene3D - 266 395 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1168 Ahy-Chr6 17197734 17204681 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1168 1 369 Core DNA Replication Machinery Family AT5G08020 21.466 1.10e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1168 - - ahf:112696273 887.871