Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1117 ATGCCGAAAGATTCATCAATCTCAAGTTCTGACGATGATTCGGTTGTGTTCTTGGGGGATGTTACACCCCAAGGTAACCGTAACCGTAACCGTTACCGTCGTGTGCGTCGACGTGTGCTTGAAGGTGACAACGGAATACCTGCCAACCCTAACCCTAACGATAATCGTAGCCTAATCGTTGGAGGTCATGATCTGCGTGCCAGGAGGACCGTGACGGGTAATAACCAGCCCAACCGTGACGGCAACGCTTCTGAAGAGAGTACTCAAGCGGCTAAGAAGGCAGCAGGTCAAGCAAGAAAGAGTGGTGATGCAAACTTTCATGTCGGTGAGAGCAGCAAAATCCAAAAGAGGAAGACGAAGAAGAGGGGGAGGAAGAAGAAGAAGAAGGAGAACGACGATGTTTTGGATGAAATGACGAATAAGTTACTACGCGCCGGTTGGGAAATTGAGATTGATGAAAAAGATGAAGAAACTGTTTTCTATGATCTGAAGGGGAGAGCTTATACCAATTGCATCATAGCTGCGTACGAGTGTTTGAAAAAGAAGTATGAGGAGCGCAAAGGAAGAGGGATCTATTATTTGAAGAATTACAAGTTTACTCCCATCAAGGATGATGATTTCGAGAAGCTTCTGTCATGGAAAGATGCTAAGAAGAGGAAAAAAAAAGATGAAGCTCATGATCCAAACCCTAATAATAACAATTGTAATAAGAGGGGAAAGAATAGCAGGGAAGACGCGAACAAGAAGAAGCAGAAGCAGAAGGTGGAAACGAGCATGAAAGGAAAAGAGAAGGTTGTTTACGATGAATCTGATTCTGATTCTGATTCTGACAAGGATCCAAATGATGACACGTGTCTTCTCTGTGCAAATGCTCGAGAAGGCACTCTGGTTTGTTGCGACGGTTGTCCTTCTTGTTTCCATCTGAGCTGCTTGAAATTACCTGGGGTTCCACCTGGTGACTGGTACTGCAGTTATTGCAGATGCAAATTTTGTGGGTTGATGACTGGTGCAGCTGATGATCCTATGTCACGCACATGTTGCTTTTGCGAGCATAAATATCATAGGTTCTGTTCACCCATGACTGGTGGCATCGTGATTGATCTTTCAGATAATCCGTTACACTTTTGCAGTAACAAATGCGAACAGTTGTTTGGGAGAGTTCAAGGGCTTCTTGGGGTCAAACATGAAATTGGAGATGGGTTTTCTTGCACTTTTTTATCTGGATTTGAGAATAATCGTCCTACCCAACTTCCAGAATGCCATGACAAGCTGGTTAGGGCACAGAAAATAATGCAAGATGGATTCAAACCAGGAATTGACCATAGAACCGGGATAAATTTGATACAAAGTGTTGTATACAGTCGTGGGTCAAAGTTCAATCGCATGAATTATACAATGTTCTTTACTGCAATTATGGAACGGGACGACGAGATTATATGTGTGGCATCACTAAGGGTTCATGAAAACAAAGTAGCAGAGATGCCACTAATTACAACCCGTGGTATGTATAGGCGACAAGGAATGTGTACCCGATTCATGACAGTCATCGAATCTGTTCTAAGCAGTTTAGGTGTTGACTTATTGGTCATACCATCAGTCAAAGAACGCGAGAAGACTTGGGTTTCAGTGTTTGGGTTTGAACCCTTTGATCTGGAAACCAAAACTAGAACTGAAAAAATGAAAATTTTTGTTTGCTCTGACTCGGTTATGCTGAAGAAAAACATTAAGAGTGTTGTCAGAGAAGTTCCTAATACTGAGAGGAACCAGTTCTAA 1773 0.4275 MPKDSSISSSDDDSVVFLGDVTPQGNRNRNRYRRVRRRVLEGDNGIPANPNPNDNRSLIVGGHDLRARRTVTGNNQPNRDGNASEESTQAAKKAAGQARKSGDANFHVGESSKIQKRKTKKRGRKKKKKENDDVLDEMTNKLLRAGWEIEIDEKDEETVFYDLKGRAYTNCIIAAYECLKKKYEERKGRGIYYLKNYKFTPIKDDDFEKLLSWKDAKKRKKKDEAHDPNPNNNNCNKRGKNSREDANKKKQKQKVETSMKGKEKVVYDESDSDSDSDKDPNDDTCLLCANAREGTLVCCDGCPSCFHLSCLKLPGVPPGDWYCSYCRCKFCGLMTGAADDPMSRTCCFCEHKYHRFCSPMTGGIVIDLSDNPLHFCSNKCEQLFGRVQGLLGVKHEIGDGFSCTFLSGFENNRPTQLPECHDKLVRAQKIMQDGFKPGIDHRTGINLIQSVVYSRGSKFNRMNYTMFFTAIMERDDEIICVASLRVHENKVAEMPLITTRGMYRRQGMCTRFMTVIESVLSSLGVDLLVIPSVKEREKTWVSVFGFEPFDLETKTRTEKMKIFVCSDSVMLKKNIKSVVREVPNTERNQF* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1117 590 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 278 577 - -
Ahy6g1117 590 MobiDBLite consensus disorder prediction 1 133 - -
Ahy6g1117 590 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 70 270 - -
Ahy6g1117 590 ProSitePatterns Zinc finger PHD-type signature. 285 326 IPR019786 -
Ahy6g1117 590 MobiDBLite consensus disorder prediction 238 271 - -
Ahy6g1117 590 MobiDBLite consensus disorder prediction 1 28 - -
Ahy6g1117 590 PANTHER PHD FINGER PROTEIN 12 278 577 IPR042163 GO:0003714|GO:0045892
Ahy6g1117 590 MobiDBLite consensus disorder prediction 69 91 - -
Ahy6g1117 590 ProSiteProfiles Zinc finger PHD-type profile. 282 329 IPR019787 -
Ahy6g1117 590 Pfam PHD-finger 285 329 IPR019787 -
Ahy6g1117 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 379 IPR013083 -
Ahy6g1117 590 SUPERFAMILY FYVE/PHD zinc finger 263 328 IPR011011 -
Ahy6g1117 590 PANTHER PHD FINGER PROTEIN 12 70 270 IPR042163 GO:0003714|GO:0045892
Ahy6g1117 590 MobiDBLite consensus disorder prediction 219 281 - -
Ahy6g1117 590 SMART PHD_3 284 327 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1117 Ahy-Chr6 16416633 16430890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1117 279 575 PHD Transcription Factor Family AT4G14920 40.461 1.97e-72 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy6g1117 PHD 5.00E-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1117 - - ahf:112696224 1118.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0206 16 2145234 2159925 Ahy6g1117 6 16416633 16430890 hybridization
Ahy6g1117 6 16416633 16430890 Ahy2g0615 2 9441196 9448656 PCT
Ahy2g0615 2 9441196 9448656 Ahy6g1117 6 16416633 16430890 PCT