Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0947 ATGGAGCAAGCCACAGGAGTGCTGCGTGGATCCACTCACGACGACGTCGTATTAGAGTCAATTCAATTCAACGAAGAAATCCGGGGAATCATGGCGCCCGCGCCAGCGCCGGAAAACGCCAGCTCATTCACCGCGCTGCTCGAGCTACCGCCGACGCAGGCCGTTGAGCTCCTCCATTCTCCTGATTGCCCGGCCGCCGATCGGGAACCGCCGTGCCATGTTAGCACCAACCAAAAACCCTACCTTCTTTGCTCCTACGGCGGCAATTTGACCTTCCCTTCCAACGCCGCGCTGATAGAACGCGCCGCCAAGTTCTCCGTCTTCGCTGGCGAGAACTCGCCGCCGGAGGATGCGGCGCGCCTGGCTCCAGTAGCTGTATCCGGCGTGGTGAAGAATGAGCCGCAGGAAACCGACTCGAACCCCAGCTCCACGCAGGGTTGCGTTTCGGATCCCGCTGTTGATACCAAGAATCAGAAGACCGCGAAGAGGAAGGAGCGAGAGAAGAAGGGTAAGGGCTCGTCGAAGAAGAGCAAGAGCGTCGCCGATGAGTGTTCCGGCGACGGTGAAAAGCTTCCATATGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACGGATAGCCATAGCTTAGCAGAAAGGGCAAGGAGAGAGAAGATAAACGCTCGGATGAAGCTTTTGCAGGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACGGCCTTGGTTCTGGATGAAATTATCAACCACGTGCAATCTCTACAGCGTCAAGTGGAGTTCTTATCAATGAAATTAGCAGCCGTTAATCCAAGAATTGATTTCAGCCTGGATAGCTTGCTGGCTACTGATGGGTCATCTGTAATGGACAGCAACTTAACTAGCATGGCTTCACCTGTTATGTGGCCAGAAAACCTAGCCAATGGTAACAGACAGCATTTTCAACAACATTGGCAATTTGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAGCCAACCATAATTTCATGACTCCAGAACACTCACTTCTGAGTTATGACTCGTCTGCTAATTCAGCATCTCTGCAGTCAAATCAATTGAAGATGGAGCTCTGA 1089 0.5298 MEQATGVLRGSTHDDVVLESIQFNEEIRGIMAPAPAPENASSFTALLELPPTQAVELLHSPDCPAADREPPCHVSTNQKPYLLCSYGGNLTFPSNAALIERAAKFSVFAGENSPPEDAARLAPVAVSGVVKNEPQETDSNPSSTQGCVSDPAVDTKNQKTAKRKEREKKGKGSSKKSKSVADECSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFSLDSLLATDGSSVMDSNLTSMASPVMWPENLANGNRQHFQQHWQFDAFHQPLWGREEANHNFMTPEHSLLSYDSSANSASLQSNQLKMEL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0947 362 Coils Coil 242 262 - -
Ahy6g0947 362 MobiDBLite consensus disorder prediction 132 186 - -
Ahy6g0947 362 Pfam Helix-loop-helix DNA-binding domain 206 253 IPR011598 GO:0046983
Ahy6g0947 362 SMART finulus 208 258 IPR011598 GO:0046983
Ahy6g0947 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 252 IPR011598 GO:0046983
Ahy6g0947 362 Gene3D - 199 271 IPR036638 GO:0046983
Ahy6g0947 362 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 362 IPR024097 GO:0006355
Ahy6g0947 362 CDD bHLH_AtBPE_like 192 277 - -
Ahy6g0947 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 271 IPR036638 GO:0046983
Ahy6g0947 362 MobiDBLite consensus disorder prediction 172 186 - -
Ahy6g0947 362 MobiDBLite consensus disorder prediction 132 155 - -
Ahy6g0947 362 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0947 Ahy-Chr6 12390846 12396139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0947 10 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.785 1.01e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy6g0947 HLH 1.40E-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0947 - - gmx:100814124 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0378 16 7348496 7353656 Ahy6g0947 6 12390846 12396139 hybridization
Ahy6g0947 6 12390846 12396139 Ahy12g1613 12 87259732 87265744 PCT
Ahy6g0947 6 12390846 12396139 Ahy2g1381 2 72775309 72781329 PCT
Ahy12g1613 12 87259732 87265744 Ahy6g0947 6 12390846 12396139 PCT
Ahy2g1381 2 72775309 72781329 Ahy6g0947 6 12390846 12396139 PCT