Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0940 ATGGCTCACAACAACTCTTCTTACTCCAATCTCTTCTTCTCCTCCTCTTCTTCTTCTTCTTCCTCTTCTTCCTTCTCCTCTCCTGCAACACCAGCACCACCGCCCTTTTTCCAATTCAACCACCACCGTTATTTCCCTTATTATTACCACCACCATCACACTACTACTGCTTCTGCACCTTTCTCTTATTCATCCTCATCTACTACTTCACCTCCTTCCCCTCCTCTCAGGGAAGAGCTTCCGCTTCTCACTCTCAGTCCCGCAAGGCCCGACACCAACCACCACCCTTCTTGCAGCACCACTTCCATGGATTTCGACGAAGAAGATGACGCCGATGCTGACGACGCTGATGCTGATGCTACTGATGCTGCTGATGCTACTACCGTCACGGTTGCACTGCACATAGGGCTTCCGAGCCCTAGCGCTGCGGAGATGGCATCCGTGCTCTCCGAGAAGGAGCACGGCGGAGGCGAGGATTCCGGAGGCGGTGGTTCGACGGGGAACAAGGTGAACAAGGGACAGTACTGGATCCCAACCCCATCTCAGATTCTGATTGGTCCTACTCAGTTTTCTTGCCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAATATAGAAAAGGACCAGAATCTCTAAGGGGAACTCAACCAACAGGGATGTTAAGGTTACCATGCTATTGTTGTGCACCAGGGTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGACTTTAGAACACTGCAAACACACTACAAGAGGAAGCATGGGATTAAGCCTTTCATGTGCAGGAAATGTGGCAAGGCCTTTGCTGTTAGGGGTGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATTTGTGGTTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCACATTAAAGCTTTTGGCTCTGGCCATGCAGCTTATGGCATTGATGGTTTTGAAGAAGATGATGATCCTGCTTCTGAAGTAGAGCAAGATCATGAATCCACCCAATAA 1056 0.4877 MAHNNSSYSNLFFSSSSSSSSSSSFSSPATPAPPPFFQFNHHRYFPYYYHHHHTTTASAPFSYSSSSTTSPPSPPLREELPLLTLSPARPDTNHHPSCSTTSMDFDEEDDADADDADADATDAADATTVTVALHIGLPSPSAAEMASVLSEKEHGGGEDSGGGGSTGNKVNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEDDDPASEVEQDHESTQ* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0940 351 Gene3D Classic Zinc Finger 189 212 - -
Ahy6g0940 351 PANTHER ZINC FINGER PROTEIN WIP2 49 350 IPR043584 GO:0003700|GO:0010468
Ahy6g0940 351 MobiDBLite consensus disorder prediction 103 121 - -
Ahy6g0940 351 MobiDBLite consensus disorder prediction 59 121 - -
Ahy6g0940 351 Gene3D Classic Zinc Finger 252 327 - -
Ahy6g0940 351 MobiDBLite consensus disorder prediction 143 171 - -
Ahy6g0940 351 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Ahy6g0940 351 SUPERFAMILY beta-beta-alpha zinc fingers 255 294 IPR036236 -
Ahy6g0940 351 SUPERFAMILY beta-beta-alpha zinc fingers 186 212 IPR036236 -
Ahy6g0940 351 MobiDBLite consensus disorder prediction 332 351 - -
Ahy6g0940 351 SMART c2h2final6 190 212 IPR013087 -
Ahy6g0940 351 SMART c2h2final6 274 294 IPR013087 -
Ahy6g0940 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Ahy6g0940 351 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 49 350 - -
Ahy6g0940 351 MobiDBLite consensus disorder prediction 59 73 - -
Ahy6g0940 351 MobiDBLite consensus disorder prediction 1 27 - -
Ahy6g0940 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 294 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0940 Ahy-Chr6 12269683 12271634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0940 76 351 C2H2 Transcription Factor Family AT3G57670 68.750 1.83e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy6g0940 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0384 16 7460608 7462602 Ahy6g0940 6 12269683 12271634 hybridization
Ahy6g0940 6 12269683 12271634 Ahy12g1595 12 86366564 86371102 PCT
Ahy6g0940 6 12269683 12271634 Ahy2g1355 2 71408754 71413314 PCT
Ahy12g1595 12 86366564 86371102 Ahy6g0940 6 12269683 12271634 PCT
Ahy2g1355 2 71408754 71413314 Ahy6g0940 6 12269683 12271634 PCT