Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0854 ATGTCCATGATGCTTGCATTATCCTCTCCAACAAGTATGTTCCCTAATAACATGGAATGGCCCTTAGAGTTAGAAGAAGAAGAACTAAGTCATAGTCATCATGAATACTTCAACTCAGAAGAGTATCCATTACTCTCTTCTTCCATGGCCAAGAAATTTAATCACAATGCAAGCGAGCGCCACCGCCGCAAGAAGATCAATGCCTTGTACTCTTCTCTCCGGTCAATCCTCCCTGTTGCAGATCAAACCAAGAAGATGAGCATCCCAGCAACAATTTCAAGAGTGTTGAAATACATACCTGAGTTGCAACAACAGGTGGAAGAACTGATCAAGAAAAAGGAGGAGCTCTTGTTGAGAATTTCTCGGCAAGGGGATATTAATAATGATGATGCAGCAGCAGCAGCAGCAATGAACAAGAAAGGCCATCATCGTCAGAACTCTTCTGGCTTTCTGGTTTCATCAAGTAGGATCAGTGACAGTGAAGTTAGTATTCAGATCATTTCTTCTTATGGAATCCAAAAGTGTCAAGTATCTGAAATCTTGGTGTGTTTAGAAAATCACTATGCCCTTCAACTGCTAAATGCTTCTTCCTTTGACACCTTTGGAGGAAGACTCTTCTACAACCTGCATTTTCAGATGGAAATGGCTCATACATTAGACACAGAAGTTCTAAGCGAGAAGATCTTGTCAATATGTGAGAAGCATCAAAGGATATAA 717 0.4073 MSMMLALSSPTSMFPNNMEWPLELEEEELSHSHHEYFNSEEYPLLSSSMAKKFNHNASERHRRKKINALYSSLRSILPVADQTKKMSIPATISRVLKYIPELQQQVEELIKKKEELLLRISRQGDINNDDAAAAAAMNKKGHHRQNSSGFLVSSSRISDSEVSIQIISSYGIQKCQVSEILVCLENHYALQLLNASSFDTFGGRLFYNLHFQMEMAHTLDTEVLSEKILSICEKHQRI* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0854 238 SMART finulus 56 108 IPR011598 GO:0046983
Ahy6g0854 238 CDD bHLH_AtORG2_like 51 123 - -
Ahy6g0854 238 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 26 234 IPR015660 GO:0003700|GO:0006357
Ahy6g0854 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 120 IPR036638 GO:0046983
Ahy6g0854 238 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 26 234 - -
Ahy6g0854 238 Gene3D - 45 128 IPR036638 GO:0046983
Ahy6g0854 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 102 IPR011598 GO:0046983
Ahy6g0854 238 Pfam Helix-loop-helix DNA-binding domain 54 103 IPR011598 GO:0046983
Ahy6g0854 238 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0854 Ahy-Chr6 10712263 10713430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0854 49 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 46.842 1.04e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy6g0854 HLH 1.90E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0854 - - gmx:100803424 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0481 16 8945004 8946601 Ahy6g0854 6 10712263 10713430 hybridization