Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0741 ATGGCGGAAGCGAAGGAAGAGAGCAAATCTAGCGAGGAGAGTGTGAAGCTGTTCGTAGGTCAAGTTCCGAAGCACATGACGGAATCGGAACTGCTGGCAATGTTCAAGGAGTTCGCGTTGGTCGACGAGGTCAACATCATCAAGGACAAAGCCACGCGCTCCTCTCGAGGTTGTTGCTTCGTGATTTGTCCGTCGAGGGAAGAGGCTGATAAGGCCGTCAATGCGTGTCACAATAAGAAAACGCTGCCAGGGGCTTCTAGTCCATTGCAAGTAAAGTATGCTGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATCGGAATGCTTCCAAAGAATGTTTCTGAAGTTGAAGTCTCTGCACTTTTCTCCAAGTTCGGAACTATAAAAGATTTACAAATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCCCTTGCTGCTTTAGAGGCAATCAATGGAAAGCATAAAATGGAGTATTTTGGATCTTCAAGCGGCATTCAGCCACAAAATCCAGGTGGTGAGAGACATGAACATTTAACCATGTGCCTTGGATTCAATGGTTCTAGTGTTCCTTTGGTAGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGACGAGCTCAGAGAGCACAGTCCCAAGCTTCCAATGCACCACATGCTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCTCCGTATAATGGATACGGTTACCAGGCTCCTGGAGGTTATGGGATCATGCCATACCGGATGCCACCGATGCAGAATCAACCTGGTTACCATAACATGATGCCGCACATGAATCAAGCAAATGCACTACGGCCCGAACTTGGCCCCAATATGAACCCAAGAAATTATCATGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTGCTGTTCCAGGCCTACAACATCCAATCGCATACGCAGGAGGCATGATTAGTCCAAGGCCTATGAGTAGTTCTCCTGGTTCTATTTCACCTGCAGGTGGTAATGGCAACTCTGGTACATCATCTTCAAGTGCTAGCAAGAGTTCTGGGGGTCAAGTTGAAGGACCACCTGGTGCCAACCTGTTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCCACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCCCCTGAAGCTGCTCAATCAGCCATTAGTATGATGAATGGGTGCCAATTAGGAGGTAAGAAATTAAAGGTCCAGCTTAAGAGGGATAACAAGCAGAGTAAGCCTTACTGA 1383 0.4526 MAEAKEESKSSEESVKLFVGQVPKHMTESELLAMFKEFALVDEVNIIKDKATRSSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKFGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEYFGSSSGIQPQNPGGERHEHLTMCLGFNGSSVPLVVKWADTEKERQARRAQRAQSQASNAPHADSQHPSLFGALPMGYVPPYNGYGYQAPGGYGIMPYRMPPMQNQPGYHNMMPHMNQANALRPELGPNMNPRNYHVPPASYVGSYPAVPGLQHPIAYAGGMISPRPMSSSPGSISPAGGNGNSGTSSSSASKSSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0741 460 Gene3D - 2 99 IPR012677 -
Ahy6g0741 460 Gene3D - 348 452 IPR012677 -
Ahy6g0741 460 PANTHER RNA BINDING PROTEIN 189 447 - -
Ahy6g0741 460 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Ahy6g0741 460 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 168 - -
Ahy6g0741 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Ahy6g0741 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 447 IPR000504 GO:0003723
Ahy6g0741 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 166 IPR000504 GO:0003723
Ahy6g0741 460 PANTHER RNA BINDING PROTEIN 7 168 - -
Ahy6g0741 460 Gene3D - 100 220 IPR012677 -
Ahy6g0741 460 MobiDBLite consensus disorder prediction 338 369 - -
Ahy6g0741 460 SUPERFAMILY RNA-binding domain, RBD 103 455 IPR035979 GO:0003676
Ahy6g0741 460 CDD RRM1_2_CELF1-6_like 16 92 - -
Ahy6g0741 460 CDD RRM3_CELF1-6 377 449 - -
Ahy6g0741 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 375 453 IPR000504 GO:0003723
Ahy6g0741 460 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 189 447 - -
Ahy6g0741 460 MobiDBLite consensus disorder prediction 213 237 - -
Ahy6g0741 460 MobiDBLite consensus disorder prediction 221 235 - -
Ahy6g0741 460 CDD RRM1_2_CELF1-6_like 104 179 - -
Ahy6g0741 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Ahy6g0741 460 MobiDBLite consensus disorder prediction 338 370 - -
Ahy6g0741 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 166 IPR000504 GO:0003723
Ahy6g0741 460 SMART rrm1_1 104 179 IPR000504 GO:0003723
Ahy6g0741 460 SMART rrm1_1 376 449 IPR000504 GO:0003723
Ahy6g0741 460 SMART rrm1_1 16 92 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0741 Ahy-Chr6 9098671 9103381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0741 368 450 Eukaryotic Initiation Factors Gene Family AT1G22760 38.554 2.04e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0556 16 10702873 10707513 Ahy6g0741 6 9098671 9103381 hybridization