Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0726 ATGGCAGAGTTCTCTTCCGCATCAACTCTTCCAACTCCACCTGAATCTCAAACTAGACTACACTTTGGGAAATTGCAGCACGGGTGCGAACACTACAAGAGACGTTGCAAAATTCGAGCTCCATGCTGCAACCAGATCTTCTCTTGCCGTCACTGCCACAACGACGCCATGGGTTCACTTAGCGATCCCAAGGAGCGCCATGAACTTGTCAGGCGCGATGTTAAGCAAGTTATATGTTCTATCTGTGATACTGAGCAAGAGGCTGCTAAGGTCTGTGCTAACTGTGGCGTCAACATGGGAGAATATTATTGTGAAATTTGCAAATTTTATGATGATAATACAGAGAAAGGACAGTTCCATTGCGACGAATGCGGGATTTGTAGGGTTGGTGGTCGTGATAATTTCTTCCACTGTCCGACATGTGGCTCTTGCTATTCAGTGAACTTGCAAGGCAACCACCCGTGTGTGGAGAACTCAATGAAGAGTTTCTGTCCTGTCTGTTATGAGTATCTGTTTGATTCAATAAAAGGTACCACAATTATGACTTGTGGACACACAATGCATATGGATTGCTTTTATGAAATGGCAGAGCAAAATCAGTATCGCTGTCCTATATGCTCAAAGACAGTTTTTGATATGTCTCGGAGCTGGGAACATTTAGATCAGGAGATTGAAGCTGTTCCCATGCCTGAGGAATATAATTTTGAGGTTTCTATTCTGTGCAATGATTGTAACAATTCAGGCAGGGTTTCCTTTCACCTATTTGGTCACAAATGCAGAAACTGTGGTTCGTATAACACCCGCAGAATTTCAGCACCAGAAAGCTAG 828 0.436 MAEFSSASTLPTPPESQTRLHFGKLQHGCEHYKRRCKIRAPCCNQIFSCRHCHNDAMGSLSDPKERHELVRRDVKQVICSICDTEQEAAKVCANCGVNMGEYYCEICKFYDDNTEKGQFHCDECGICRVGGRDNFFHCPTCGSCYSVNLQGNHPCVENSMKSFCPVCYEYLFDSIKGTTIMTCGHTMHMDCFYEMAEQNQYRCPICSKTVFDMSRSWEHLDQEIEAVPMPEEYNFEVSILCNDCNNSGRVSFHLFGHKCRNCGSYNTRRISAPES* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0726 275 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 21 270 IPR031109 GO:0008270|GO:0016567
Ahy6g0726 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 234 IPR013083 -
Ahy6g0726 275 Pfam Zinc-ribbon 211 268 IPR039512 -
Ahy6g0726 275 Pfam CHY zinc finger 29 109 IPR008913 GO:0008270
Ahy6g0726 275 SUPERFAMILY RING/U-box 163 213 - -
Ahy6g0726 275 Gene3D - 235 273 - -
Ahy6g0726 275 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 270 - -
Ahy6g0726 275 SUPERFAMILY CHY zinc finger-like 26 98 IPR037274 GO:0008270
Ahy6g0726 275 ProSiteProfiles Zinc finger CTCHY-type profile. 99 163 IPR017921 -
Ahy6g0726 275 ProSiteProfiles Zinc finger RING-type profile. 164 207 IPR001841 -
Ahy6g0726 275 SUPERFAMILY Zinc hairpin stack 100 157 IPR037275 -
Ahy6g0726 275 Pfam Zinc finger, C3HC4 type (RING finger) 164 206 - -
Ahy6g0726 275 ProSiteProfiles Zinc finger CHY-type profile. 22 97 IPR008913 GO:0008270
Ahy6g0726 275 SMART ring_2 164 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0726 Ahy-Chr6 8956490 8961000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0726 27 272 C2H2 Transcription Factor Family AT3G18290 43.083 4.41e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0726 K10144 - gmx:100818374 461.07