Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0683 ATGAGTAGGCGTGGGAGCAGAACAGTCTACGTTGGCAACCTCCCTGGTGATATTCGTGAAAGAGAAGTAGAAGATTTGTTTTCAAAGTATGGACATATAACTCACATTGATCTCAAGGTTCCGCCAAGGCCTCCTGGCTATGCATTTGTGGAGTTTGAAGACTATCAAGATGCTGAGGACGCGATTCGAGGGCGTGATGGATATGATTTTGATGGCCACCGCTTGCGGGTGGAGCCTGCACATGGAGGGCGTGGTCATTCATCTTCAAGAGATCGATATAGTAGTCACAGCAACGGTCGAGGTGGACGTGGGGTATCTAGGCGCTCGGAATATCGTGTTCTGGTCACTGGATTGCCCTCTTCTGCTTCATGGCAGGATCTTAAAGATCACATGCGAAAGGCCGGGGATGTTTGCTTTTCCCAAGTTTTCCATGATGGAAGAGGAACTACTGGGATTGTGGATTACACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGACGACTCTGAGTTTCGGAATGCATTTTCCAGGGGCTATGTTCGGGTGAGGGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGCAGCCGCAGTCGTAGCTACAGTCGGGGCCGGAGCCCAAGCAAATCTCCAAAGGGGAAGTCTTCACCACGGTCACCAGCTAAATCTCCACCAAGATCTGCTTCCCGTTCTCGTTCAAGATCAAGGTCTCGTTCTTTATCAGGCGTAATAAAAGCCCAAAAAGACGCAGTGCTAGCAGGAGTCCAAGTAGAAGCAGGAGCAGGAGCAAGAGTTTGTCCCGGTGAATTTTGA 867 0.4913 MSRRGSRTVYVGNLPGDIREREVEDLFSKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRGRSPSKSPKGKSSPRSPAKSPPRSASRSRSRSRSRSLSGVIKAQKDAVLAGVQVEAGAGARVCPGEF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0683 288 MobiDBLite consensus disorder prediction 73 107 - -
Ahy6g0683 288 Gene3D - 2 110 IPR012677 -
Ahy6g0683 288 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 258 - -
Ahy6g0683 288 MobiDBLite consensus disorder prediction 206 220 - -
Ahy6g0683 288 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 258 - -
Ahy6g0683 288 MobiDBLite consensus disorder prediction 186 266 - -
Ahy6g0683 288 SUPERFAMILY RNA-binding domain, RBD 6 176 IPR035979 GO:0003676
Ahy6g0683 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Ahy6g0683 288 SMART rrm1_1 8 78 IPR000504 GO:0003723
Ahy6g0683 288 SMART rrm1_1 112 185 IPR000504 GO:0003723
Ahy6g0683 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Ahy6g0683 288 CDD RRM2_SF2_plant_like 111 186 - -
Ahy6g0683 288 MobiDBLite consensus disorder prediction 73 108 - -
Ahy6g0683 288 MobiDBLite consensus disorder prediction 221 260 - -
Ahy6g0683 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Ahy6g0683 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Ahy6g0683 288 CDD RRM1_SF2_plant_like 8 78 - -
Ahy6g0683 288 Gene3D - 111 188 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0683 Ahy-Chr6 8402741 8407206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0683 2 195 Eukaryotic Initiation Factors Gene Family AT4G34110 25.123 2.38e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0683 K12890 - gmx:100789847 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0622 16 11501549 11506020 Ahy6g0683 6 8402741 8407206 hybridization