Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0657 ATGTGTGGCGGTGCCATAATCGCTGAGTTCATTCCCCGCAACCGTTCTCGCCGACTTACTGCCTCTGAAATCTGGCCCAACACATTCTCTAACAACCAAGTCGACGACTTTGACTTCGATTTTTCTCATCATCATCTCAAAAACACACCCACTCTCAGTAAAGCTTCTTCGCCTTCAGTTGGTGAGCAAGATCAGGAGAACAGCAAGCCCCCCGCGAAGAGGCAGAGGAAGAACCTCTACAGAGGGATCAGGCAGCGTCCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCAAGAAAAGGTGTTCGCGTTTGGCTCGGAACCTTCAACACCGCCGAAGAAGCCGCCAGGGCCTACGACAGAGAAGCTCGTAAGATTCGCGGAAAGAAAGCTAAAGTGAACTTCCCCAACGAGGATGACGAATACTCCATTCAACAATCTCGCAATGTTATTCCAAACGTTCCTCCTCCGATTCGACGATCGAGTAATCATCCTCCTCTGTATCAATATGGTGATGCCAACAACAACAACATGAACAACCAGGCAAGGACTCTGAACCTCAACTTGGAGTTTGGTTACGATCTGAACCATGGAGGAGCCGTTGGCGTTGGTGATGCCATCAATGCAGACCCATTTGTGAGTTGTGTTGATGAGAATTCTGAGTATGGGTCTGGTTCTGGCTCGGCATCGGAGGTGGCAGGTGGGTCAAGTGGTGATCAACAACATCAAGAGGAGAAGAAGAGCTACGAGGTGGAGAAGCTTTCGGAGGAGCTAATGGCATATGAGAACTACATTGGGTTTTATGATCAAATGCCCTTCTATGATGCACAATCTGCTGCTGCCGCCGCCGCCAACAACAACAACAACGTTGTTCAGGAAAGTGTGGTTGGGGAACTTTGGACCTTCGATGAATGA 915 0.4962 MCGGAIIAEFIPRNRSRRLTASEIWPNTFSNNQVDDFDFDFSHHHLKNTPTLSKASSPSVGEQDQENSKPPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQQSRNVIPNVPPPIRRSSNHPPLYQYGDANNNNMNNQARTLNLNLEFGYDLNHGGAVGVGDAINADPFVSCVDENSEYGSGSGSASEVAGGSSGDQQHQEEKKSYEVEKLSEELMAYENYIGFYDQMPFYDAQSAAAAAANNNNNVVQESVVGELWTFDE* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0657 304 CDD AP2 80 137 IPR001471 GO:0003700|GO:0006355
Ahy6g0657 304 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Ahy6g0657 304 MobiDBLite consensus disorder prediction 49 81 - -
Ahy6g0657 304 MobiDBLite consensus disorder prediction 49 66 - -
Ahy6g0657 304 PANTHER EREBP TRANSCRIPTION FACTOR 1 258 - -
Ahy6g0657 304 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Ahy6g0657 304 PANTHER DNA-BINDING DOMAIN 1 258 IPR044808 GO:0003700|GO:0009873
Ahy6g0657 304 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Ahy6g0657 304 Pfam AP2 domain 80 128 IPR001471 GO:0003700|GO:0006355
Ahy6g0657 304 MobiDBLite consensus disorder prediction 219 249 - -
Ahy6g0657 304 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Ahy6g0657 304 MobiDBLite consensus disorder prediction 219 239 - -
Ahy6g0657 304 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Ahy6g0657 304 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0657 Ahy-Chr6 8130135 8131487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0657 1 137 AP2-EREBP Transcription Factor Family AT3G16770 55.000 4.82e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy6g0657 AP2 9.00E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0657 K09286 - gmx:100819416 307.76