LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy6g0604	ATGGAGAAGAAGGAGATAATGATGAGTGTGAAGATGGAAGATGCATCATCACTATTCAGCAATAACATTCCATTATGGAGCGTGTTTGATTTGTGTCAAGAAACAGAGGAGAAGGGTTCTTTAGGGTTTATGGATCTACTCGGTGTGCATCAAGACTACTACAACGGTGGTGGTGGTGGTGGTGCTCCTCTGCTTGCTGATAATAATTCTCCATCTCAGGTAACTGTGAAAGAGTGTCCTTCAAATTCAGAGACTACTCAACAGCAACCTCCTACTACTCCAAAGTCTTCAACTACTACTTCAGCATCACCTCTTTCATCATCCGTGTCCACCACTACTACTGTGGACCAAGCTGCACCGTCATCTCAACACGCCGACAAAGTGTTGAAGGCGAAGAAGACAAATGGGAAGAAAAGAGAGAGGGAAGCTCGATACGCGTTCATGACAAAAAGCGAGGTGGATCATCTCGAAGACGGTTACAGATGGAGAAAGTACGGCCAAAAAGCTGTCAAAAACAGCCCCTTTCCAAGGAGCTATTATCGTTGCACCAGTGGATCATGTAATGTGAAGAAGCGTGTGGAAAGGTCTTTCACTGATCCAACAATTGTGGTCACAACATATGAAGGTCAACACACACATCCAAGTCCACTTCTAATGCCTCGCTCTTCATCATCATCATCATCAATGCCTCAAACCTACTTCTCCCACCAACACTATCTACACCCACATCATCAACAACTCTTATTTAATACATTCCCTTCTCTTGATTTTCCTCCTCCTCCTCCTCCTTCTTCATCTCAGGACACCACCAATAACAATGCATTATTTCCTCTAAGCGACCATGGCCTTCTTCAAGATGTTCTTCCTTCACACATGTTCAAGCAAGAGTAG	891	0.4411	MEKKEIMMSVKMEDASSLFSNNIPLWSVFDLCQETEEKGSLGFMDLLGVHQDYYNGGGGGGAPLLADNNSPSQVTVKECPSNSETTQQQPPTTPKSSTTTSASPLSSSVSTTTTVDQAAPSSQHADKVLKAKKTNGKKREREARYAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSGSCNVKKRVERSFTDPTIVVTTYEGQHTHPSPLLMPRSSSSSSSMPQTYFSHQHYLHPHHQQLLFNTFPSLDFPPPPPPSSSQDTTNNNALFPLSDHGLLQDVLPSHMFKQE*	297

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy6g0604	296	MobiDBLite	consensus disorder prediction	251	277	-	-
	Ahy6g0604	296	MobiDBLite	consensus disorder prediction	62	141	-	-
	Ahy6g0604	296	Gene3D	WRKY domain	140	217	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g0604	296	MobiDBLite	consensus disorder prediction	126	141	-	-
	Ahy6g0604	296	SMART	WRKY_cls	156	215	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g0604	296	MobiDBLite	consensus disorder prediction	66	121	-	-
	Ahy6g0604	296	ProSiteProfiles	WRKY domain profile.	151	216	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g0604	296	PANTHER	WRKY TRANSCRIPTION FACTOR	2	258	-	-
	Ahy6g0604	296	Pfam	WRKY DNA -binding domain	157	214	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g0604	296	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	2	258	IPR044810	GO:0003700
	Ahy6g0604	296	MobiDBLite	consensus disorder prediction	211	231	-	-
	Ahy6g0604	296	SUPERFAMILY	WRKY DNA-binding domain	148	216	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy6g0604	Ahy-Chr6	7454642	7456641	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy6g0604	124	296	WRKY Transcription Factor Family	AT2G47260	53.299	2.10e-54	178

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Ahy6g0604		WRKY	2.60E-26	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g0731	16	13336532	13338618	Ahy6g0604	6	7454642	7456641	hybridization
	Ahy6g0604	6	7454642	7456641	Ahy19g1205	19	22836286	22838798	PCT
	Ahy6g0604	6	7454642	7456641	Ahy9g0943	9	18007304	18010586	PCT
	Ahy19g1205	19	22836286	22838798	Ahy6g0604	6	7454642	7456641	PCT
	Ahy9g0943	9	18007304	18010586	Ahy6g0604	6	7454642	7456641	PCT