Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0602 ATGGTGAATTTCAGCGGAGACCCTCACAGTTACACTCAACCTCAAACCCAAGACAACAGCAACCACTTCAACCACCCTAACGGCAACTACAACTGCCACAACGGGGTCAATGCCTTCCCCAACCCTAACCCAATCGATTCTCCTGCTTCTGGATATAACCATTCACGTCCACCCCGCAAGCGAGCTTGGACTTCTACTTCTCCAGATCAAGCAGATGGTGCGTGTCATGTAAAAGTTTATGTTGCACCGGTTCCAAGAACAGCTACCGAGACTGATATCCGCCTGGTGTTTGAAGGGCATGGGACTATTGTTGAGGTTGTTCTTTTAAAAGATAAGAGAACTGGTGGACGACAAGGAAGTTGTTTTGTGAAATATGCAACATTAGATGAAGCTGAGAGAGCCATTAAGGCTTTAAACAATAAGTATACATTTCCTGGGGAATCATCTCCTGTTGTTGTCAGATATGCTGATCGGGAACGTGAACGGCTTGGGGTTCGAACATTTGTACGGAACGTGGAAAAGAAAGATCCTTCAGAAGAGGTTGCTGATAAAGTATTTGTTAGTTGCATCAACAAAGAAGCTTCGAGAAACGAAATAGAAGAAATATTTTCTGCTTATGGACATATAGAAGATGTCTACCTGCACAATCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCGTTGGCGGCAATCAAAGGGCTGAACAACACATTCACAATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGAGCCAAAGAAACCAAAGACTGGAGATCCAAGAGGCAACTTTTTAAATGGGAATGGAAATTTTGGTCCCCTTCCTCAGGAATCAGCAGTTTGGCCAGTGCCAAATTTCGGTGATCCAAATACTAGAGGAAGTATTATGCCTATGGCTCCACATCGTTCTACTATTGCACACCCACAAGTTTCTTCTCATATGCAGAATTGGGAACCTGGGGCTAACATGGTGCCCCAGCCATTTCCTATCCAACAGCCACATTCACAATTGACTTCGATGCCTTTGCAGTGCAATCAAGCTCCAAAGATGTCTTCTCAACCATTTTATCCTGAGGTGCAGAGACAGTTGCATCCAACAGATTTGTCAGTGCAAAATATAGAGCAGCAGCCAAGTTCACAGACACCTACTCAGAGTGTAAGCAATTCTAATACAGTTGCTGGCAGTATTTCACCTGATATGCCTACTAGTCCTGTAGATGAAGATTTTCCCGAGTGTGAGTGGAGTGAGCACTACTGCCCTGATGGTCATACTTACTACTACAATTGCGTCACTTGTGAAAGCAAATGGGAAAAACCTGAGGAGTATGCTCTCTATGAGAGAGGGTCTCTGAAGCAGCAAAAGCATGAGGATCATAAAGAATCGCAGGAGCTGCAGGAGCACGATGATCATAAAGATTCGCAGAAGCTGCATGAGCTCAAGGATCATGAAGATTCACGGAACCTGCAGGAACACGTGAATCATAAAGATTTTCAGAAACTGCAAGAGCACGAGGATCATAAAGATTTACAGAAGCTGCAAGAGCACGGGGATTATAATGATTCACAGAGGCAGCAAGAGCACAGGGATCATACTGATTCACGGAAGCAGCAAGAGCACGAAGATCATAAAGATTTGCAGAGGCTGCAGGAGCATGAGGATCATAAAGATTTGCAGAGGCTGCAGGAGCACGAGGATCATAATGGTTCACAGAGGCAACATGGGCACGGGGATCATAATGATTCACAGAAGCCACAAGAGAACGAGGATCATAAAGAATCACAGCATCAGCAAGAGCATGAGGATCATAAATATTCACAGAAGCAGCAAGAGAACGAGGATCATAAAGAATCACAGAAGCTGCAAGAGCTTGAGGATGACAGCTGTCTTTTGTCACAATTATCATTATCCTCCTCTGCACAAGTTGCTCAAAGCCAAAAGGAAACAGATAATGATCAAGGGCACTCAAAAGCAAGTTCTGTTGTTGGAGAGGGGTGA 2010 0.4408 MVNFSGDPHSYTQPQTQDNSNHFNHPNGNYNCHNGVNAFPNPNPIDSPASGYNHSRPPRKRAWTSTSPDQADGACHVKVYVAPVPRTATETDIRLVFEGHGTIVEVVLLKDKRTGGRQGSCFVKYATLDEAERAIKALNNKYTFPGESSPVVVRYADRERERLGVRTFVRNVEKKDPSEEVADKVFVSCINKEASRNEIEEIFSAYGHIEDVYLHNRGYAFVKFSNREMALAAIKGLNNTFTMRGCDHPLIVRFAEPKKPKTGDPRGNFLNGNGNFGPLPQESAVWPVPNFGDPNTRGSIMPMAPHRSTIAHPQVSSHMQNWEPGANMVPQPFPIQQPHSQLTSMPLQCNQAPKMSSQPFYPEVQRQLHPTDLSVQNIEQQPSSQTPTQSVSNSNTVAGSISPDMPTSPVDEDFPECEWSEHYCPDGHTYYYNCVTCESKWEKPEEYALYERGSLKQQKHEDHKESQELQEHDDHKDSQKLHELKDHEDSRNLQEHVNHKDFQKLQEHEDHKDLQKLQEHGDYNDSQRQQEHRDHTDSRKQQEHEDHKDLQRLQEHEDHKDLQRLQEHEDHNGSQRQHGHGDHNDSQKPQENEDHKESQHQQEHEDHKYSQKQQENEDHKESQKLQELEDDSCLLSQLSLSSSAQVAQSQKETDNDQGHSKASSVVGEG* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0602 669 MobiDBLite consensus disorder prediction 504 669 - -
Ahy6g0602 669 PANTHER TRANSFORMER-2-RELATED 309 482 - -
Ahy6g0602 669 PANTHER TRANSFORMER-2-RELATED 58 308 - -
Ahy6g0602 669 MobiDBLite consensus disorder prediction 377 403 - -
Ahy6g0602 669 CDD WW 417 446 IPR001202 GO:0005515
Ahy6g0602 669 SMART rrm1_1 78 154 IPR000504 GO:0003723
Ahy6g0602 669 SMART rrm1_1 184 253 IPR000504 GO:0003723
Ahy6g0602 669 ProSiteProfiles WW/rsp5/WWP domain profile. 419 446 IPR001202 GO:0005515
Ahy6g0602 669 Gene3D - 66 164 IPR012677 -
Ahy6g0602 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 257 IPR000504 GO:0003723
Ahy6g0602 669 MobiDBLite consensus disorder prediction 377 413 - -
Ahy6g0602 669 Gene3D - 403 473 - -
Ahy6g0602 669 SMART ww_5 414 446 IPR001202 GO:0005515
Ahy6g0602 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 242 IPR000504 GO:0003723
Ahy6g0602 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 144 IPR000504 GO:0003723
Ahy6g0602 669 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 309 482 - -
Ahy6g0602 669 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 58 308 - -
Ahy6g0602 669 SUPERFAMILY RNA-binding domain, RBD 41 166 IPR035979 GO:0003676
Ahy6g0602 669 Pfam WW domain 418 444 IPR001202 GO:0005515
Ahy6g0602 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 158 IPR000504 GO:0003723
Ahy6g0602 669 SUPERFAMILY RNA-binding domain, RBD 177 267 IPR035979 GO:0003676
Ahy6g0602 669 MobiDBLite consensus disorder prediction 629 653 - -
Ahy6g0602 669 MobiDBLite consensus disorder prediction 454 478 - -
Ahy6g0602 669 MobiDBLite consensus disorder prediction 1 70 - -
Ahy6g0602 669 MobiDBLite consensus disorder prediction 1 50 - -
Ahy6g0602 669 MobiDBLite consensus disorder prediction 504 628 - -
Ahy6g0602 669 Gene3D - 170 263 IPR012677 -
Ahy6g0602 669 SUPERFAMILY WW domain 419 449 IPR036020 GO:0005515
Ahy6g0602 669 Coils Coil 611 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0602 Ahy-Chr6 7421706 7428121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0602 79 280 Eukaryotic Initiation Factors Gene Family AT1G71770 26.267 2.28e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0602 K13207 - gmx:100776162 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0734 16 13372856 13379344 Ahy6g0602 6 7421706 7428121 hybridization