Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0582 ATGAGTCTTCCTATTGATCCTGTTCAGAAAATCTCTCCATGGAAGGAAACTTGGAGTATTGAGGCTAAGATCTTGACCATTTGGGAAGATGCTAGCATTGTTAATGAAAATATGCAGAAACTGTTACATATGGTGTTGATGGATAAGCAGCACCACAAGGTCCAAGCAACTGTTGACCATGATTTGATCACAACTTTTATTCATCAATTAAAAGAAGGACATGTATTCATTATTTCTGACTTCAAAGTGATACCTAATGGTGGATTGGTTAGGGTTACAAGACATCGATTCCGCATCCTTTTCAAGTGTAGTACCTCTGTTGTTGCAGCTGCAGATAGAGACATACCTAATCCTGGTTTAAGTTTAACCTCTATGGACGAGATTCTTCAAAAGCGCTCTGATTATGAGTACCTAATAGATTTTGTTGGGGTTCTGTGCGGATTGAAAAGGAAAACTGATGTTGAGTTTAATGGAAAGATATTCAGAGTTATTGTCCTTGCAGTTTTTGCATATGGGAAGAAAATCCCCTGTATTCTTGTTGGTGAGTGTTCTGCTCTTATGGATATCAATAGTTTGAAAAAGTATCAGAGAGCACCAGTTCTTATTCTGGAATCTTTCAAGATCCAAGTCAATGGAGATAAAGTTAGTCTTCAAAATGTCATCAATGTTTCTCGGGTTTCAATCAACCGTGATATGCAGGAAACAGTGAATTTTCTGAATGGATACCATATCGCAAGCCATGATTTCAGTAGACTGTGTAGTGATGAGAATGGGGATTTAGTATGTGTAATCGATGATGAATCTTTTGACTGGAAGCTAATGCGGACTATTGCTAATCTTAAAGGAAACAATGAGGATGGACAATTCTTTGTGGTTGGAAAAATTAAAGAGATTGTTGAAGATCCAGAGTGGTGGGTCTTTTGTTGTGTTTGTGGTCATCCAATTGTTGGTGATGATAATGTGTTTCATTGTCAGCTGTGCGGCAAAGAGGTCCAGCATTTTATGACCAGTTACAGGATTAAGATACTTGTTGAAGATGGTACTTCTTGTGGAATGTTTGTGTTGTTAGACAGTGCGGCGACTAAGCTATTAGGGAGAACCTGTTCTGATGTGTTTTTGTTGTTAGAAGATGAAATGGAGAAAATTGAGCACCCATACTGTCCACAGTTTTTTCATCAACTCATTGGGAAAGAGATTGTTTTCAAAGTTCAGGCAAAGCGGATTAACAGTCCCGGTTATTGTGGTACCTTTAAAATCATCAATGTCATTAGTGATGCACGTTTTTTCAGGAAAGTTCAGTCTGATCAGTGCATCAAGGATGTTACTTCTGATTCGGGCTTTAGCCCAATACTTGAAGACTTCTCTCAGTGTGGACAGCTTAGAAGTTATCACAACCAAGTTGTTTCTGGTGTTCCAATACAACTGCATAGTGTTAAAGAGATGCTTGCTGACATTCTTTGTGCTAAAATATATTCTTCTGCATCAAGAAATGATCAGATTTGTATTTTGATCGGTGAAATTATTGATGTGCCGAAACATCAGAAGTGGTGGTACTATTGCTGTTTGTGTAATGCACCTGTTTCTCATGTTGGAAATTTATTTTATTGTTATCTGTGTAAAATTGAGTGTTTTGATGTCATAAGAAGGTATCTATTTTATCTCTTGGAGTTCTTGGTACCAGTTTTTCTTTTTGCTTAA 1698 0.374 MSLPIDPVQKISPWKETWSIEAKILTIWEDASIVNENMQKLLHMVLMDKQHHKVQATVDHDLITTFIHQLKEGHVFIISDFKVIPNGGLVRVTRHRFRILFKCSTSVVAAADRDIPNPGLSLTSMDEILQKRSDYEYLIDFVGVLCGLKRKTDVEFNGKIFRVIVLAVFAYGKKIPCILVGECSALMDINSLKKYQRAPVLILESFKIQVNGDKVSLQNVINVSRVSINRDMQETVNFLNGYHIASHDFSRLCSDENGDLVCVIDDESFDWKLMRTIANLKGNNEDGQFFVVGKIKEIVEDPEWWVFCCVCGHPIVGDDNVFHCQLCGKEVQHFMTSYRIKILVEDGTSCGMFVLLDSAATKLLGRTCSDVFLLLEDEMEKIEHPYCPQFFHQLIGKEIVFKVQAKRINSPGYCGTFKIINVISDARFFRKVQSDQCIKDVTSDSGFSPILEDFSQCGQLRSYHNQVVSGVPIQLHSVKEMLADILCAKIYSSASRNDQICILIGEIIDVPKHQKWWYYCCLCNAPVSHVGNLFYCYLCKIECFDVIRRYLFYLLEFLVPVFLFA* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0582 565 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Ahy6g0582 565 Pfam Replication factor-A C terminal domain 291 407 IPR013955 -
Ahy6g0582 565 Pfam Domain of unknown function DUF223 44 138 IPR003871 -
Ahy6g0582 565 Gene3D - 265 426 IPR012340 -
Ahy6g0582 565 Gene3D - 477 555 IPR012340 -
Ahy6g0582 565 CDD RPA1_DBD_A_like 19 107 - -
Ahy6g0582 565 Gene3D - 3 112 IPR012340 -
Ahy6g0582 565 Gene3D - 120 245 IPR012340 -
Ahy6g0582 565 PANTHER REPLICATION FACTOR A 1, RFA1 304 448 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy6g0582 565 PANTHER REPLICATION FACTOR A 1, RFA1 20 147 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy6g0582 565 PANTHER BNAC01G35430D PROTEIN 304 448 - -
Ahy6g0582 565 PANTHER BNAC01G35430D PROTEIN 20 147 - -
Ahy6g0582 565 SUPERFAMILY Nucleic acid-binding proteins 279 407 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0582 Ahy-Chr6 7075184 7078605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0582 1 380 Core DNA Replication Machinery Family AT5G08020 20.854 3.18e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0582 - - ahf:112771159 1040.8