Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0580 ATGGACGAAGCGCTGAGGCGCCTCAACGGCATGTCCCCCCTTCCCGAACCACCTTCCAACAAACCCACCAAGCGGACCCTGCGAGACACCAGCACTTCGCCCGCTGCCGGAGCCATCAGGTACCGTGGCGTCAGGCGGAGGCCATGGGGCCGTTACGCCGCCGAGATAAGGGATCCTCAGTCCAAGGAGCGCCGTTGGCTGGGGACTTTCGACACCGCAGAGGAAGCCGCCTGCGCCTACGACTGCGCTGCCAGAGCCATGCGTGGCCTTAAGGCCAGGACCAACTTTGTGTACCATACTTCACCTCCTCACTCTTCTTCCATCACCGTCACTAACAACCATAACAATCTCCTTAACCTCCATAACCACCTCTTCACTCATAACCAGTTCAGCTTCCTTAATCATCATAACCAACTCTTCAACGGCCATAACCGCCACTTCGGGGGTTGTTGGTCTGACCCTTCTTCTTCAACCTTCCAACAACAGCGAAACCTTCACTCCATCGACATGCTTCTCCAGGACTTTATAGCCTCTTCTTCCCCCGACTATTTATGCGACACCAAGGGCAGTTTTGTCAATTCACATCCTGTAAATGTTGCTAATAACTACAGCGCACCTTGTTCTGACACAAGCCATGTCGGTTGTGGCAGTGGAAGCAAGATCGATACTACTACTACTACTACTGCTGCTACTACTAATAATAATAATAATCAAGCTGATCATGGTGGTGGCGAAGAAGACTCAAAGGAGCAATTGTATGGAGGTTCAGAGTCGTCAGGCTTGTTGGAAGAAATAGTTAATGGTTTCTTGAAGAAAAAGCCAAAGCTCAACAAATGCGAGAGATCGTTAGGTACCAGTACCACTGCTACAGACGGTTCATGCCACTTGTCACTTCTTCCGCCTCCTCTTCCTCTGGTTGTTTCCGGCGAGTCGAAGAGAGACGATGGTTTCGGCGTGCATTTGGATCAGCAGGGTTTACATTACATGCAGCAGATCAGTGGTGGTTTCAATAATGATTTTAGCAATATGGTTATGCAGCCTAACATGCCTCTTCAAGAGAATGACAACCAAATGAAGATGATGATGTTGAATAATGATAATAATCATGCAGAAGTAGATTGCTCTATCATAGACAACATTTTTCAGGATGCATAA 1155 0.4874 MDEALRRLNGMSPLPEPPSNKPTKRTLRDTSTSPAAGAIRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYHTSPPHSSSITVTNNHNNLLNLHNHLFTHNQFSFLNHHNQLFNGHNRHFGGCWSDPSSSTFQQQRNLHSIDMLLQDFIASSSPDYLCDTKGSFVNSHPVNVANNYSAPCSDTSHVGCGSGSKIDTTTTTTAATTNNNNNQADHGGGEEDSKEQLYGGSESSGLLEEIVNGFLKKKPKLNKCERSLGTSTTATDGSCHLSLLPPPLPLVVSGESKRDDGFGVHLDQQGLHYMQQISGGFNNDFSNMVMQPNMPLQENDNQMKMMMLNNDNNHAEVDCSIIDNIFQDA* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0580 384 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Ahy6g0580 384 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Ahy6g0580 384 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Ahy6g0580 384 MobiDBLite consensus disorder prediction 226 256 - -
Ahy6g0580 384 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 364 - -
Ahy6g0580 384 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Ahy6g0580 384 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Ahy6g0580 384 MobiDBLite consensus disorder prediction 226 241 - -
Ahy6g0580 384 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 23 364 - -
Ahy6g0580 384 MobiDBLite consensus disorder prediction 1 38 - -
Ahy6g0580 384 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Ahy6g0580 384 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Ahy6g0580 384 CDD AP2 40 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0580 Ahy-Chr6 7042931 7044678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0580 39 98 AP2-EREBP Transcription Factor Family AT1G24590 98.333 7.45e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy6g0580 AP2 2.70E-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0580 - - aip:107639893 709.138