Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0544 ATGGGAAGAAAAGCTGCTACTACTTGTTCCTCTTCCTCTAACATTTCTTCAACTGCTTCCTTGAATCTGAGGCTTGCACTCAGCACTCATGAAGAATGTGGTGGAAGCCTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATAGGGAGGAAGCTCAACATATTAGCACATAGAAGCTACCATGAGCTTGTTAAGAGACTTGAGAACATGTTCGACACTACCATTCTCTGGGGTACAGAGATGGATGAAGTTGTAGTTCAACCTGGTGAGAGATGCCATGTCCTCACTTATGAAGATGAAGAAGGAGATCTTGTTATGGTTGGGGATGTTCCTTGGGAGATGTTTGTTTCCACTGTAAAGAGGTTGAAGATCACAAGGGTAGACACATTCACTACCTCTTGA 402 0.4353 MGRKAATTCSSSSNISSTASLNLRLALSTHEECGGSLFVKVYMEGIPIGRKLNILAHRSYHELVKRLENMFDTTILWGTEMDEVVVQPGERCHVLTYEDEEGDLVMVGDVPWEMFVSTVKRLKITRVDTFTTS* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0544 133 ProSiteProfiles PB1 domain profile. 36 129 IPR000270 GO:0005515
Ahy6g0544 133 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 130 IPR003311 GO:0005634|GO:0006355
Ahy6g0544 133 Pfam AUX/IAA family 29 126 IPR033389 -
Ahy6g0544 133 Gene3D - 31 133 - -
Ahy6g0544 133 PANTHER AUXIN-INDUCED PROTEIN 35 130 - -
Ahy6g0544 133 SUPERFAMILY CAD & PB1 domains 31 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0544 Ahy-Chr6 6698133 6698991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0544 39 128 B3 DNA Binding Superfamily AT2G46530 35.556 3.46e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ahy6g0544 AUX_IAA 7.60E-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0544 K14484 - gmx:100818376 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0798 16 14265040 14265900 Ahy6g0544 6 6698133 6698991 hybridization
Ahy6g0544 6 6698133 6698991 Ahy19g1270 19 25347299 25349137 PCT
Ahy6g0544 6 6698133 6698991 Ahy9g1001 9 19758239 19760300 PCT
Ahy19g1270 19 25347299 25349137 Ahy6g0544 6 6698133 6698991 PCT
Ahy9g1001 9 19758239 19760300 Ahy6g0544 6 6698133 6698991 PCT