Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0543 ATGGGGGAGAATATGTTCAACTCCAGCCGCACAGGGATGACAAGAAGCTCCTCCTTGTTGCATGTGAATAAGGATATTGGTGAGCTGGTATGGGAAAATGGTGAAGTTAAAGTGCAAGGAAGAGGAGCAGCAGTGGAAGAAACAGCAGCAAAGTTAGAGAGATTTTACTGCTCCTCAATTTTGGATCAAAGCAAGAAGCAGATCCAACAAGGATTTTCAAACTTCAAACTTACCTCCTTTTCACAACAGTGCAAGAAACCAAGAATAATAGATTTTTCAGGTTCAGCACAAGCAACAACAAAATCACACACACTACAGCACTTGGGTACTTGCAATAATAATAATAATAATAATAATAATAATAATAATAATCAGAGAACATCATTAGGAGGAGGAATGGTGAACTTCCCAAACTTCTTGGTTCCTTCACTCTTCCTCAACAAATCTTCTTCTGCTGCTGCTGCTGCCACTAGTAGTAAAGGTCATGATCATTCATCTGTGGTGATTGATTCTTCTAATAATAACAAAGCAGCAACACAAGAACTCAAAGAAACACCTTTTCATCAGGTACAACCACTTGATCAACACTCTCATGGTCAAAAACTATATCATGAAGCCTCATCAAGTTCAGCAGCACCACCACCACCTAATTATAATAGTAATAATAATATTGAACAACACTTGGTAGTAGCATCTTCCCCTGTAAGCTCTATTGGAGCCTCAAACGACCCTGACATTGGTATTATGAGGAAGCAGCATGAGGAATACAGCAACATCACTGATCATGATCATGATCATGATGACACCACAACATATATAAGTGATGATGATGATGAAGAAACAGAAGATGTAATAATAGCAAAGGAAACACCAGCTGCAGGTACCAGAGCCAAGAGAAGCAGGGACCCAGAGGTTCATAATTTATCTGAAAGGGTCAACAAGAGGATTCATACATTGAAAGAACTCATACCCAATTGCAATAAGATTGATAAAGCTTCAACTCTTGATGATGCAATTGACTATCTTAAGACCCTGAAGCTTCAGTTGCAGATAATGTCAATGGGGAGAGGACTTTGCATGCCATTGATGATGTTACATAATCATCATAATCAGTTAATGTGTTATAGGCCATCATCAGGCACAGGCATTCCCCATCAAAACATGTTTGATGGTTTCTTCAACCAAATGAGGCCTATGATTATGCCACCATCACCACCTTTCATCAATCCCACTCCACCACTTGCGCCATTGTCAATCGCCAATTCTTCCGGTCTAGATGTCTCACATGTTCAAGCAATCAATAATGGTGATCAGGTTTCCCTTCACCAACACACAACTAGTAGCAGCTACCCCTTCTATTTTCCCACAATCATCAATCAGGAGGAAAAGAATAATTATGGAATGGAATAG 1410 0.3957 MGENMFNSSRTGMTRSSSLLHVNKDIGELVWENGEVKVQGRGAAVEETAAKLERFYCSSILDQSKKQIQQGFSNFKLTSFSQQCKKPRIIDFSGSAQATTKSHTLQHLGTCNNNNNNNNNNNNNQRTSLGGGMVNFPNFLVPSLFLNKSSSAAAAATSSKGHDHSSVVIDSSNNNKAATQELKETPFHQVQPLDQHSHGQKLYHEASSSSAAPPPPNYNSNNNIEQHLVVASSPVSSIGASNDPDIGIMRKQHEEYSNITDHDHDHDDTTTYISDDDDEETEDVIIAKETPAAGTRAKRSRDPEVHNLSERVNKRIHTLKELIPNCNKIDKASTLDDAIDYLKTLKLQLQIMSMGRGLCMPLMMLHNHHNQLMCYRPSSGTGIPHQNMFDGFFNQMRPMIMPPSPPFINPTPPLAPLSIANSSGLDVSHVQAINNGDQVSLHQHTTSSSYPFYFPTIINQEEKNNYGME* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0543 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
Ahy6g0543 469 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 412 - -
Ahy6g0543 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 356 IPR036638 GO:0046983
Ahy6g0543 469 SMART finulus 307 351 IPR011598 GO:0046983
Ahy6g0543 469 Gene3D - 293 346 IPR036638 GO:0046983
Ahy6g0543 469 MobiDBLite consensus disorder prediction 190 222 - -
Ahy6g0543 469 PANTHER TRANSCRIPTION FACTOR PIF3 2 412 IPR044273 GO:0003700|GO:0006355
Ahy6g0543 469 Pfam Helix-loop-helix DNA-binding domain 310 345 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0543 Ahy-Chr6 6667948 6670215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0543 239 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 44.697 1.72e-23 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy6g0543 HLH 3.40E-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0543 K12126 - gmx:100804665 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0799 16 14306517 14308988 Ahy6g0543 6 6667948 6670215 hybridization
Ahy6g0543 6 6667948 6670215 Ahy19g1277 19 25468356 25471204 PCT
Ahy6g0543 6 6667948 6670215 Ahy9g1008 9 19903077 19905624 PCT
Ahy19g1277 19 25468356 25471204 Ahy6g0543 6 6667948 6670215 PCT
Ahy9g1008 9 19903077 19905624 Ahy6g0543 6 6667948 6670215 PCT