Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0540 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAGCTTCGGAAGGGTCTATGGTCTCCTGAAGAGGATGAAAAGCTTCTCAGGCATATCACTAAGTACGGTCATGGATGTTGGAGCTCTGTTCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGTTGCAGGCTTAGGTGGATTAATTACTTAAGGCCTGATTTAAAGAGAGGTACATTTTCTCAGGAGGAAGAAAATCTCATCATTGAACTTCATGCTGTGTTAGGGAATAGATGGTCTCAGATTGCGGCGCAGCTTCCGGGGAGGACAGACAATGAAATCAAGAATCTGTGGAATTCATGCTTGAAGAAGAAGCTGAGGCAAAGAGGCATAGACCCTGTTACACACAAGCCATTATCTGAGATAGAGAATGGATTGTCAGAGGAGAAAGAGAAAGCATTGTCCAATGATAATGAATTGAACTTGTTGAGATCAGAGAGTTCCAATAAGTCTGATGGAGCTTCTTCCTATGATCATCAACAACAACAACAACAACAAGGATTTGTTCCAACAACAACAGAGATGGAAGGTTCTTCTTCCACTAACAAGGACATGTTCCTTGACACTACAAGGTTCATGGCTAACACTTGCTCAGATTTTATGGGGAACTACAACATGAGTTATGCATCATCATCTTCCAATGTCACTGTCACCGACAACAACAATTGGTTCACACAAACATCAAGGCCTTCTTTTGATATCAACTCAGATTTCCTACCTGCTTCCTTTTGCTACAAGCCAGAATCTCTCAAGAACACCAACATGCTTTCTTCTTCTTCTTCTTCATGGGGATTGATCACAGATTGCAGCATGGAAGAAGCAGAAGAGGCAAAGTGGTCTGACTATCTTCACAATCAAATGTTGATGCTTGCAGCTGTTCAGAACAACAACAACAACAACAACCAAGCTTCTTTATGCAATGAGATAAAGCCTCTTCCTTCAACCACCACAGTAACACCACCACCACCACCACATTTGGTTCCTGATACTTTAGGAGCTATCATGTTACCTCATTCTAAGAATCAACATCACCATACATCACAAACTTCTTCTACCACCACCTTTTCCAAGGATATCCAGAACCTAACAGCAGCCTTTGGACATATATAA 1140 0.4193 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEIENGLSEEKEKALSNDNELNLLRSESSNKSDGASSYDHQQQQQQQGFVPTTTEMEGSSSTNKDMFLDTTRFMANTCSDFMGNYNMSYASSSSNVTVTDNNNWFTQTSRPSFDINSDFLPASFCYKPESLKNTNMLSSSSSSWGLITDCSMEEAEEAKWSDYLHNQMLMLAAVQNNNNNNNQASLCNEIKPLPSTTTVTPPPPPHLVPDTLGAIMLPHSKNQHHHTSQTSSTTTFSKDIQNLTAAFGHI* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0540 379 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy6g0540 379 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ahy6g0540 379 Gene3D - 11 67 - -
Ahy6g0540 379 MobiDBLite consensus disorder prediction 156 194 - -
Ahy6g0540 379 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Ahy6g0540 379 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy6g0540 379 PANTHER MYB DOMAIN PROTEIN 55 1 322 - -
Ahy6g0540 379 CDD SANT 17 61 IPR001005 -
Ahy6g0540 379 SMART sant 13 63 IPR001005 -
Ahy6g0540 379 SMART sant 66 114 IPR001005 -
Ahy6g0540 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ahy6g0540 379 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy6g0540 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ahy6g0540 379 PANTHER MYB DOMAIN PROTEIN 55 1 322 - -
Ahy6g0540 379 Gene3D - 68 143 - -
Ahy6g0540 379 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0540 Ahy-Chr6 6616143 6618358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0540 1 157 MYB Transcription Factor Family AT4G01680 83.439 6.99e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy6g0540 Myb_DNA-binding 1.70E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0540 K09422 - gmx:100819449 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0802 16 14366514 14368683 Ahy6g0540 6 6616143 6618358 hybridization
Ahy6g0540 6 6616143 6618358 Ahy19g1283 19 25755740 25757847 PCT
Ahy6g0540 6 6616143 6618358 Ahy9g1011 9 20006077 20008438 PCT
Ahy19g1283 19 25755740 25757847 Ahy6g0540 6 6616143 6618358 PCT
Ahy9g1011 9 20006077 20008438 Ahy6g0540 6 6616143 6618358 PCT