Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0410 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCCACAGATAACACTAACAGCAGAGTAGAAGGAGGAGGAGGAGATGCATCACTATTGTTACTTAATAAAAATAAACAGCAATCAGAGTCAGAGATACTTGGTGGTGGTGGTGGTGGTAACTTCCATAGTCCAAATTCTCATTCTTCAACCATCACTACTAATAACAGCAGCAGCAATGCTTCCAACGCAAATTCACAACCACAACCACCACCGCCTCCTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTCTATCGCCAAACACGCTGGTGACTACAAACCGGTTCATATGTGAGATCTGCAACAAAGGTTTCCAAAGGGATCAGAACCTTCAACTGCACCGGAGAGGGCATAACCTGCCATGGAAGCTGAAACAGAGAAGCAGCAGCGAAGTGCGGAAAAGGGTGTACGTGTGTCCGGAAGCGTCGTGTGTGCACCACAATCCTGCTCGAGCACTGGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAGCACGGCGACAAGAAGTGGAAATGTGAGAAATGCAACAAGAAATACGCCGTTCAATCTGACTGGAAAGCTCATTCCAAAATCTGTGGTACCAAAGAATACAAATGTGACTGCGGCACCGTCTTTTCCAGAAGAGATAGCTTCATAACCCACAGAGCTTTCTGTGACGCACTGGCTGATGAGAATAACAAAGTGAACAATGAAGGAGGAGTACTTGGACATTTTCCAAAGATAGGCTCCAACTTATTGCAACCATTAATCCCAAACCTAGTTGCATCATTACCAATCACTCGCAATAACACTAGTATTTCTACTTCCGAATTCAAGCAGCATCCATCATCATTCCCTCATGAACTCATGCCAATTTCAATGCCTGAACAAAAACCCTTCATCAACACCACCACCACCAATAACAACCACCTAATAAACCCTTCATCACTGCCCTCTCTTCAACTGAACTCACCACATTCTCCGCTAAACATGTTCGATGAGAGTGGTGGGGTCCATTTAGCTGCAGGGTTACCTCACATGTCCGCCACGGCATTGCTTCAAAAAGCTGCACAAATGGGTGCAACAAGCGTGAGCAATAATAACAATAACACTAGCATGGCACCCCCGTCATTTGCTTCTTCCAATAATGGGATCATCATGGAACACTTCATGCACAATGCTCATCCTCAACACGATAATATTTCACCGTCTCATCAGTTTAATAATAACAATAATTTCAACGGGAGCGTTGGAATGAACGGTGTGGAAATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTAGCCAAGATCATTGATCAGAACAACAGAAGCAGTGGATTCAGTATCCCACCGGTGAGTGGTAGGAGTAGTAGCACCATTAATATTGGTGGAGCTAATAAGGGAAGTGACGATGTAATGACTCTGGACTTTCTGGGAATCGGAGCGGGAGGTGCTGGTGGTGGTGGCGGCGGCGGAGATGGTGGTGCCCATGGATACTTTGGTATTGGTCCCTTAGCGTAA 1566 0.4534 MSNITSCDSGSFSTDNTNSRVEGGGGDASLLLLNKNKQQSESEILGGGGGGNFHSPNSHSSTITTNNSSSNASNANSQPQPPPPPKKKRSLPGNPDPSAEVIALSPNTLVTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSSEVRKRVYVCPEASCVHHNPARALGDLTGIKKHFSRKHGDKKWKCEKCNKKYAVQSDWKAHSKICGTKEYKCDCGTVFSRRDSFITHRAFCDALADENNKVNNEGGVLGHFPKIGSNLLQPLIPNLVASLPITRNNTSISTSEFKQHPSSFPHELMPISMPEQKPFINTTTTNNNHLINPSSLPSLQLNSPHSPLNMFDESGGVHLAAGLPHMSATALLQKAAQMGATSVSNNNNNTSMAPPSFASSNNGIIMEHFMHNAHPQHDNISPSHQFNNNNNFNGSVGMNGVEMFNAILDQSKALAKIIDQNNRSSGFSIPPVSGRSSSTINIGGANKGSDDVMTLDFLGIGAGGAGGGGGGGDGGAHGYFGIGPLA* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0410 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 137 IPR013087 -
Ahy6g0410 521 Gene3D Classic Zinc Finger 169 249 - -
Ahy6g0410 521 MobiDBLite consensus disorder prediction 77 91 - -
Ahy6g0410 521 MobiDBLite consensus disorder prediction 1 23 - -
Ahy6g0410 521 MobiDBLite consensus disorder prediction 53 76 - -
Ahy6g0410 521 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 58 497 - -
Ahy6g0410 521 SMART c2h2final6 191 211 IPR013087 -
Ahy6g0410 521 SMART c2h2final6 156 186 IPR013087 -
Ahy6g0410 521 SMART c2h2final6 115 137 IPR013087 -
Ahy6g0410 521 MobiDBLite consensus disorder prediction 1 100 - -
Ahy6g0410 521 Gene3D Classic Zinc Finger 94 164 - -
Ahy6g0410 521 Pfam Zinc-finger double-stranded RNA-binding 115 137 IPR022755 -
Ahy6g0410 521 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Ahy6g0410 521 SUPERFAMILY beta-beta-alpha zinc fingers 114 211 IPR036236 -
Ahy6g0410 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 58 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0410 Ahy-Chr6 5118707 5122558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0410 60 248 IDZ Gene Family AT3G50700 77.778 9.83e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy6g0410 zf-C2H2_jaz 7.70E-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0410 - - gmx:100813556 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0951 16 17077879 17081879 Ahy6g0410 6 5118707 5122558 hybridization
Ahy6g0410 6 5118707 5122558 Ahy19g1487 19 40081469 40088133 PCT
Ahy6g0410 6 5118707 5122558 Ahy9g1203 9 31890686 31897450 PCT