Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0279 ATGTCAAATAACAGCAGTGGAGGTAAGAAGAGAAAACTCTACCCACCAAAAGAATCCGAAGATTGGTGCTTTGAATGCAAGGATGGTGGAGAAGTCATTGTATGCGATCGCAGGAACTGTGTGAAGGTTTATCACTCCTACTGTGTTCCAGTTACCCCTGAGAAGGACAAATCTTGGATTTGTGCTTGGCATTATTGCTTCGAATGCAAGGAATCCGCAAAGTTTTATTGCCTTGGTTGTCCAAATGCTTTGTGCAAAGAGTGCTTGGCTTCCTCAGAATTTATCACTGTCAAGGGTGATAAAGGATTATGCTGCAACTGCGCGCCGCTAGTCAAAATTATAGAACAAAATTTGGAGCTGGACTCTCAGGGGAACAAGATAAGCGTGAATGGAAGAGATACATATGAGGGTCTATTCAAGGAATACTGGGAAATTATTAAGCTAAACGAAGGATTAACTAGTGATGATATCTCTGCTGCAGAAACCAACTACAACAAAGTGGTTAAAAATTCTCCAGATCAAAGCAAAGTCATTGATGTAGATAAAGAAAGTCAGAATGACTCCATGTCATCGGACGGCAATGAAGCTTTTGTGTATAAACACAACTCAACCAAAAGGAAGCAGTCCAGATCACTGGAGTTTATGGGATGGGGATCGAAACCTCTCCTTAGCTTCCTTGCGTCCATTGGAAAATTTAGTACTGAACCATTGTCACAGTGGGGTATACGGACTCTCGTGTGTGAATACATTGAGAAGAACAATCTCTATCTCTCGCAAGATAAGAAGAAGTTCCTCCTTGATGAAAAGTTGTTTCCTATATTCGGAAAAAAGGTTATGTCAAAAAATCAAATATATCCTCTATTGGAACTTCACTATGCTGAAAAGTCGGGTGATAGAGATGGTGAAGAAAGCAATTATGAAAGCATAAGCACTCCTCCAGACAAGGGTCTCAGTGCTCAGACTTCATGTAGGGAAAGGAGATTGTCAAGCTCGAAAGGAAAACTTAAATTGGAAAAGGAGGACTTGTCTATCAAGGCTAGTCGTTTTGCATCCATAAGTGCCAGTAATATAAGACTTATTTACTTAAGACAAAGATTGGTGCTAGAGTTATCTAAACAACTTGAAAGTTTTACGGGTAAGGTTGTTGGAGCCTTCGTTAGAGTTAAAATGGATTCCAGTGATTGTAAGCAGACTAGGTCTTACCATCTTGTGAGAGTTACAGGTGTTGTATTGGAGGATGATGTTAAGAGAATTCTTTTGCAAGTTTCCTTCATGTCTAAAGCCATCCCTATCTCCGAGCTTTCTGATAATGACTTCACAGAGCAAGAATGTGAGGATTTGCGGCTAAAAGTGAAAGCCAACCTGCTGCAGAAACTAACTGTTGTGGAGCTTCAAGAAAAGGCAAAAAGTCTTCATGAGGATATAACAAAGCATTGGATCGCGACACGACTAACCTATTTGCAAAATCAAATTGACCGTGCAAACCTGAGGGGAAGACAAAGAGAAAAATTTGCCTTACTAGATGAAAGGGAAGAACTTCAACAACCATGGAAGCAAGAAGAGTTGTTAAAGCGAGTTCCTTCAGTTTCCCCAGAGTTTACTACAGAGCCCCACAATGATCCTGAAGAGAACTAA 1635 0.4043 MSNNSSGGKKRKLYPPKESEDWCFECKDGGEVIVCDRRNCVKVYHSYCVPVTPEKDKSWICAWHYCFECKESAKFYCLGCPNALCKECLASSEFITVKGDKGLCCNCAPLVKIIEQNLELDSQGNKISVNGRDTYEGLFKEYWEIIKLNEGLTSDDISAAETNYNKVVKNSPDQSKVIDVDKESQNDSMSSDGNEAFVYKHNSTKRKQSRSLEFMGWGSKPLLSFLASIGKFSTEPLSQWGIRTLVCEYIEKNNLYLSQDKKKFLLDEKLFPIFGKKVMSKNQIYPLLELHYAEKSGDRDGEESNYESISTPPDKGLSAQTSCRERRLSSSKGKLKLEKEDLSIKASRFASISASNIRLIYLRQRLVLELSKQLESFTGKVVGAFVRVKMDSSDCKQTRSYHLVRVTGVVLEDDVKRILLQVSFMSKAIPISELSDNDFTEQECEDLRLKVKANLLQKLTVVELQEKAKSLHEDITKHWIATRLTYLQNQIDRANLRGRQREKFALLDEREELQQPWKQEELLKRVPSVSPEFTTEPHNDPEEN* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0279 544 CDD SWIB-MDM2_like 217 292 - -
Ahy6g0279 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 111 IPR013083 -
Ahy6g0279 544 SUPERFAMILY SWIB/MDM2 domain 205 294 IPR036885 -
Ahy6g0279 544 ProSiteProfiles Plus3 domain profile. 351 476 IPR004343 GO:0003677
Ahy6g0279 544 SMART PHD_3 22 65 IPR001965 -
Ahy6g0279 544 MobiDBLite consensus disorder prediction 518 544 - -
Ahy6g0279 544 CDD PHD5_NSD 22 64 - -
Ahy6g0279 544 Gene3D - 352 473 IPR036128 GO:0003677
Ahy6g0279 544 SMART rtf1 351 453 IPR004343 GO:0003677
Ahy6g0279 544 ProSiteProfiles SWIB/MDM2 domain profile. 211 294 IPR003121 -
Ahy6g0279 544 PANTHER OS01G0884500 PROTEIN 9 534 IPR045894 -
Ahy6g0279 544 PANTHER ZINC ION BINDING / DNA BINDING PROTEIN 9 534 - -
Ahy6g0279 544 MobiDBLite consensus disorder prediction 306 326 - -
Ahy6g0279 544 SUPERFAMILY Plus3-like 353 474 IPR036128 GO:0003677
Ahy6g0279 544 Pfam Plus-3 domain 356 450 IPR004343 GO:0003677
Ahy6g0279 544 Pfam SWIB/MDM2 domain 222 291 IPR003121 -
Ahy6g0279 544 SUPERFAMILY FYVE/PHD zinc finger 14 65 IPR011011 -
Ahy6g0279 544 MobiDBLite consensus disorder prediction 298 330 - -
Ahy6g0279 544 Gene3D SWIB/MDM2 domain 203 302 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0279 Ahy-Chr6 3459172 3463846 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0279 19 89 PHD Transcription Factor Family AT3G14980 32.911 5.13e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Ahy6g0279 Plus-3 7.40E-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0279 - - adu:107492011 1028.85