Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0270 ATGGATCATTATTATTATTATTCATCATTCTCTGTTCCACCACCATATGCAACTACATCAAACTTTAATCAATCCCTTCCCTTCAACGAAAATGACTCCGAGGAAATGCTTCTATGCGAGGTTCTTGCACAGGGAAGTGGCGGTGATGCAGCGGAAAACTCCTCCATCGAAGAGGTGAACTCAACCATGGCGGCGCTGCAGCCACAACAAGCATCTTACAGAGGGGTAAGAAGGAGGCCATGGGGAAAGTACGCGGCAGAGATAAGGGACTCTACGAGGAACGGCGAGAGGGTATGGTTGGGAACCTTTGATACGGCGGAGGAAGCTGCTTTGGCTTACGACCAAGCGGCATTGGCAAGTAGAGGATCAGTGGCGATTTTGAACTTCCCGGCAGGGATGGTTGTTGAGTCGCTAGAGAAGATGATGATGGAGTGTGGTGGGTTTAGTGAAGGTTGTTCTCCGGTGTTGGAGCTGAAGAAGAAGCATTCCATGAAGAGGAAGATGGAGAACAGGGAGAAGAAACTGCTCATGATGATGAATACAAATAATAACAACAATCATCATAATCATAATCATGTCATGGTATTCCAGGATTTGGGTGCTGACTATTTGGAACAACTTCTTACGCTCTCGTCCAAGGAGGCAATGCTATAG 654 0.4679 MDHYYYYSSFSVPPPYATTSNFNQSLPFNENDSEEMLLCEVLAQGSGGDAAENSSIEEVNSTMAALQPQQASYRGVRRRPWGKYAAEIRDSTRNGERVWLGTFDTAEEAALAYDQAALASRGSVAILNFPAGMVVESLEKMMMECGGFSEGCSPVLELKKKHSMKRKMENREKKLLMMMNTNNNNNHHNHNHVMVFQDLGADYLEQLLTLSSKEAML* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0270 217 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Ahy6g0270 217 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Ahy6g0270 217 PANTHER DNA-BINDING DOMAIN 20 210 IPR044808 GO:0003700|GO:0009873
Ahy6g0270 217 Pfam AP2 domain 73 122 IPR001471 GO:0003700|GO:0006355
Ahy6g0270 217 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Ahy6g0270 217 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Ahy6g0270 217 Gene3D AP2/ERF domain 72 131 IPR036955 GO:0003700|GO:0006355
Ahy6g0270 217 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Ahy6g0270 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 20 210 - -
Ahy6g0270 217 CDD AP2 73 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0270 Ahy-Chr6 3355096 3356039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0270 26 208 AP2-EREBP Transcription Factor Family AT3G23240 51.913 1.04e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy6g0270 AP2 3.70E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0270 K14516 - fve:101312740 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1132 16 20493050 20493897 Ahy6g0270 6 3355096 3356039 hybridization
Ahy6g0270 6 3355096 3356039 Ahy12g0908 12 18138829 18146752 PCT
Ahy6g0270 6 3355096 3356039 Ahy2g0765 2 13757297 13758244 PCT