Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0193 ATGGATTTGGAACCAGAAACTCGACGGAAAATCGAGGACATGGTGATGGATTTACTCAAGCAATCCAACATAGAAGAGACTACTGAGTTCAGCATCCGAGTCGCCGCCTCCGAGCGACTCGGCATCGATCTCTCCGATCCCAACCGCAAGCACTTCGTCAGAAACGTCGTCGAGTCTTATCTTCGAACCGTCGCTGCCGAAGACGCCACCGTTGCAGCCGAACAGAAACCGCCGGAACTGATCGCTCCTCCGGAGGAGCCCATAGAAGCGGCGTTGCAGTTGCCGAAGCCAAGTACGGAGGTTAAGGATGACTGCGATCAAGTCATTTTCCAGCTGTCAAACAAAAGGAATGTGGTGGTTAAAAAGTTCAAAGGGACAACATTGGTGTCAATTAGGGAGTTTTTCCAGAAAGATGGAAAACAGATTCCCACTTCCAAAGGGATAAGTTTATCATCTGAACAATGGTCAACCTTCAAGAAGAATGTGCCAGCTATTGAGGAAGCTATTACAAAGTTGGAAGGAAAGATGAAATCTGAGCTTCATGATAAGCAAAATGGAGATGCCTATAATTCAGTTGTTGATGTGGCTCCTCCTCTTGAGCATGTCCCTGTTGAGGTCAGCCGTTTTGATGGGAAAAATTATCAATTATGGGCTCAGCAGATGGAATCACTTTTGAAACAGTTAAAGATTGATTATGTGCTTACTGAACTAAGCCCAAATGCTGTGCTTGGTGAAAATTCTAGTGCTGAAGAAATTGCTAGAACCAAGAATGCAGAAAGGAGATGGGTGAATGATGATTTAATGTGCCGTCGCAATATCTTGACTCATTTATCTGATAGTCTATTTTGTCTCTATGCAAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGATTTAAAATTGGTTTATCTGTACGAGGAACATGGAAGCAAGAGAGTGCAGGTGAAAAAGTATCTTGAGTTTCAGATGGTTGACGAGAGACCAATTGTTGAGCAAATCCAAGAATTTAATAGCATTGCAGATTCACTCGTTGCTGCTGGAATGTTTCTCGATGAAAACTTTCATGCGAGTGCCATCATTTCAAAGCTCCCACCATCCTGGAAGGACTTCTGCATCAAGTCAATGCGCGAGGAGTATCTCCCTTTATGGAGGCTAATTGATTGTATTAGGATGGAGGAAGAATCTCGCAACGGATTCAAACGAGTTGGTGAACCTTATAGTAGGATAGGATTTAACCACTCCAATAAAGGTGGACCAAGGGAAAGTGACAATAAGTTTATGCATAGGAATAAGTCAGAGAGTAATGGCAAGAGCATAGCCTGTTATATTTGTGGCAAGAAGGGGCATCTTTCTAAACACTGCTGGAGAAGATATGACAAACAAGGTAATGAAAGAAAGGCCGAAGATGTATGTATACCTCAAGAAGTTAACATGGTGGGGGGTTGTTAG 1449 0.4313 MDLEPETRRKIEDMVMDLLKQSNIEETTEFSIRVAASERLGIDLSDPNRKHFVRNVVESYLRTVAAEDATVAAEQKPPELIAPPEEPIEAALQLPKPSTEVKDDCDQVIFQLSNKRNVVVKKFKGTTLVSIREFFQKDGKQIPTSKGISLSSEQWSTFKKNVPAIEEAITKLEGKMKSELHDKQNGDAYNSVVDVAPPLEHVPVEVSRFDGKNYQLWAQQMESLLKQLKIDYVLTELSPNAVLGENSSAEEIARTKNAERRWVNDDLMCRRNILTHLSDSLFCLYANRKMSAKELWEDLKLVYLYEEHGSKRVQVKKYLEFQMVDERPIVEQIQEFNSIADSLVAAGMFLDENFHASAIISKLPPSWKDFCIKSMREEYLPLWRLIDCIRMEEESRNGFKRVGEPYSRIGFNHSNKGGPRESDNKFMHRNKSESNGKSIACYICGKKGHLSKHCWRRYDKQGNERKAEDVCIPQEVNMVGGC* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0193 482 MobiDBLite consensus disorder prediction 410 431 - -
Ahy6g0193 482 Pfam DEK C terminal domain 7 61 IPR014876 -
Ahy6g0193 482 SMART c2hcfinal6 440 456 IPR001878 GO:0003676|GO:0008270
Ahy6g0193 482 PANTHER PBF68 PROTEIN 4 473 - -
Ahy6g0193 482 SUPERFAMILY ssDNA-binding transcriptional regulator domain 109 171 IPR009044 GO:0003677|GO:0006355
Ahy6g0193 482 Pfam Transcriptional Coactivator p15 (PC4) 110 161 IPR003173 GO:0003677|GO:0006355
Ahy6g0193 482 SUPERFAMILY Retrovirus zinc finger-like domains 422 462 IPR036875 GO:0003676|GO:0008270
Ahy6g0193 482 ProSiteProfiles Zinc finger CCHC-type profile. 441 454 IPR001878 GO:0003676|GO:0008270
Ahy6g0193 482 Gene3D - 433 479 - -
Ahy6g0193 482 Pfam gag-polypeptide of LTR copia-type 262 397 - -
Ahy6g0193 482 PANTHER PBF68 PROTEIN 4 473 - -
Ahy6g0193 482 Gene3D Transcriptional Coactivator Pc4; Chain A 100 177 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0193 Ahy-Chr6 2449266 2452518 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Ahy6g0193 Retrotran_gag_2 3.50E-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0193 - - gmx:100800963 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0959 14 15927221 15936624 Ahy6g0193 6 2449266 2452518 hybridization