Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0187 ATGGCGAATCTGGAGTGCAATCTGAGGGGACCTCCCACTCCTACAGCTCAAACAGGTGAGGGAGATGAAGATCTCTACACAGAGCTATGGAAGCTGTGTGCAGGGCCTCTCGTCGATGTTCCCCGCACTGGGGAGAGAGTCTACTACTTCCCCCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAGGTGAACCAAGAACTGAGTCAGCAAATCCCTCATTTCAATCTTCCAACCAAGATTCTCTGCCGTGTTGTTCACATTCAGTTGCTGGCGGAACAGGAAACTGATGAAGTTTATGCCCGTATCACTTTGCTTCCAGAACCAGATCAAAAAGAGCCTACAATCCCTGATCCAAGTCCAGTGGAATCTCAAAGAGAAACGTTTCACTCTTTTAGCAAGATATTAACTCCCTCTGATACTAGCACACATGGAGGATGTTCAATTCGGCGTATGCATGCCACAGAGTGCCTACCTCCATTGCCATCACCTCCATCGGATGCAGATGAAAATTCCCCACCACCATCCCAGGAGTTGGTGGCGAAGGATCTTCATGGGTTCGAGTGGAAGTTTAAGCATGTATTAAGAGGTTCACCAAAGAGGCACTTGTTCACAACTGGCTGGAGTACTTTTGTCACTTCCAAAAGACTGGTTGCTGGAGATGCTTTTGTGTTTTTAAGGGGAGAAGATGGGGAAATGAGAGTTGGGATAAGGCGACTTGCGCGGCAGCAGATCCCAATGCCTTCGTCCGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGCACCATGTTTGTGGTTTATTATAAACCAAGGAGTAGCCAGTTTATTATTGGCCTTAACAAATATCTGGAAGCAGTCAAAAATAAATTTACTGCTGGAATGCGTTACAAGATGAGGTTTGAAGTGGAAGAATCACCTGAGAGAAGATTTTCTGGTACTATTGTTGGGGTTGGGGATGTATCGCCAGGATGGTCAAACTCTCAATGGCGTTCCTTGAAGGTTCATTGGGATGAGCCGGCAACGTTTCCGAGACCAGAGAGGGTTTCTGCTTGGGAGATAGAGCCTTTTGTTGTCTCTACTGCGTTGGCCAAAAGGCCCAGGCATGCTGATCATACTTCATCATCTGAAATTGCTTCCAACACCCCTGCTTCTGCTTTTTGGTTTCATGGATCATCTATGTCCCATGATCCTGCAGAATTAGGTGGTGCTGAAGTCCAATGCAAGGAAAACCAGGTTGTATGGTCCTTGAGGCAGAAAGAAACCAATGGCAATCCCATGAATAGCCACTCCAGTAGCTCTCGGGTTCGTATGGAAGGAATATGGTCTAATTCACCACATGCGAGTGTCCCACCAAACCCCCCAAACAACAATGCTGCTGCAAAACAAGGCCTTTCACCTATTTCATCTAAACCAAATGATGATGGTTTGACTCATGATAAAGTTGAAGTAGATGCTAGAAAGAAGACTGAGAATCCCACAAAGATCTTTTTATTTGGAGTTAATTTGACTAACAACTTCCGTAGTAATGTGTCCCTTCCGGAGAAAGAACAGGCTTGCTCTGCCATTGTTCCCATTGGTCCCAAAGAATCTACTCCCATTACCATTACTGCATCAGCCACTCAGAATGCTCAGAGTTCCAACTATTCAGTGTCCGATAAGGAGCAACAGAACCAAATTTCTTCTGATGTATTGCCAGCAGAGAAGCCTAGCAAGCTGGCATCCTTACCATCCATGAGGACTCGAACTAAGGTGCAAATGCAAGGTGTAGCTGTAGGGAGAGCTGTGGACCTAACCATGTTGAATGGCTATGACGAGCTTACAATTGAGCTTGAGAAACTGTTTCATATTGAGGGAGAACTCCGATCACAAAACAAATGGGCAGTTACTTTTACTGATGATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCCGGAGTTCTGCAACATTGTGAAACGGATTTACATTTATTCAAGGGAGGATGTGAAGAAGATGAAGTATAAACTCTCCCTGCCTTCGTCGGACTGCGAAGAGACTTTGTTGTCGAAAGAAGAGACTTAA 2103 0.456 MANLECNLRGPPTPTAQTGEGDEDLYTELWKLCAGPLVDVPRTGERVYYFPQGHMEQLQASTNQEVNQELSQQIPHFNLPTKILCRVVHIQLLAEQETDEVYARITLLPEPDQKEPTIPDPSPVESQRETFHSFSKILTPSDTSTHGGCSIRRMHATECLPPLPSPPSDADENSPPPSQELVAKDLHGFEWKFKHVLRGSPKRHLFTTGWSTFVTSKRLVAGDAFVFLRGEDGEMRVGIRRLARQQIPMPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRSSQFIIGLNKYLEAVKNKFTAGMRYKMRFEVEESPERRFSGTIVGVGDVSPGWSNSQWRSLKVHWDEPATFPRPERVSAWEIEPFVVSTALAKRPRHADHTSSSEIASNTPASAFWFHGSSMSHDPAELGGAEVQCKENQVVWSLRQKETNGNPMNSHSSSSRVRMEGIWSNSPHASVPPNPPNNNAAAKQGLSPISSKPNDDGLTHDKVEVDARKKTENPTKIFLFGVNLTNNFRSNVSLPEKEQACSAIVPIGPKESTPITITASATQNAQSSNYSVSDKEQQNQISSDVLPAEKPSKLASLPSMRTRTKVQMQGVAVGRAVDLTMLNGYDELTIELEKLFHIEGELRSQNKWAVTFTDDENDMMLVGDDPWPEFCNIVKRIYIYSREDVKKMKYKLSLPSSDCEETLLSKEET* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0187 700 Pfam B3 DNA binding domain 134 241 IPR003340 GO:0003677
Ahy6g0187 700 ProSiteProfiles B3 DNA-binding domain profile. 134 243 IPR003340 GO:0003677
Ahy6g0187 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 686 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy6g0187 700 Pfam AUX/IAA family 574 628 IPR033389 -
Ahy6g0187 700 Pfam AUX/IAA family 636 674 IPR033389 -
Ahy6g0187 700 ProSiteProfiles PB1 domain profile. 592 675 IPR000270 GO:0005515
Ahy6g0187 700 MobiDBLite consensus disorder prediction 466 485 - -
Ahy6g0187 700 MobiDBLite consensus disorder prediction 157 179 - -
Ahy6g0187 700 MobiDBLite consensus disorder prediction 454 490 - -
Ahy6g0187 700 PANTHER AUXIN RESPONSE FACTOR 11 15 686 - -
Ahy6g0187 700 MobiDBLite consensus disorder prediction 430 449 - -
Ahy6g0187 700 Pfam Auxin response factor 267 346 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy6g0187 700 Gene3D - 588 680 - -
Ahy6g0187 700 CDD B3_DNA 132 241 IPR003340 GO:0003677
Ahy6g0187 700 Gene3D - 302 374 - -
Ahy6g0187 700 MobiDBLite consensus disorder prediction 1 21 - -
Ahy6g0187 700 SMART B3_2 134 243 IPR003340 GO:0003677
Ahy6g0187 700 SUPERFAMILY DNA-binding pseudobarrel domain 125 270 IPR015300 -
Ahy6g0187 700 SUPERFAMILY CAD & PB1 domains 587 668 - -
Ahy6g0187 700 Gene3D - 131 242 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0187 Ahy-Chr6 2295899 2300272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0187 21 679 B3 DNA Binding Superfamily AT4G23980 53.073 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy6g0187 AUX_IAA 3.60E-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0187 K14486 - gmx:100820503 862.062