Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy6g0152 | ATGTCCGAGGGTGCGGAGGTCAATGAGCGTGTCGACATTGATGAGGAGAATTATATGGAAGAGATTGATGATGATGTTGAAGAACAGATAGATGACCATGGACAAGAAGCACCTGAACCTCCACATGAACATAAGGGGTCACCTGCTGAGGCTGCTGCTAAAGATCAGTTGCCTGAACAAGAACAAGAAAGAAGTGACACTGCTGCAGAAATTCTCCAAGATGGGCAGAAACCATCTTCTGTCAATGAAGAAGATGAGGAGAAGGAAAAGCATGATGAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTCTTCATTGGTGGGCTTCCTCGCGATGCCAATGAAGATGATTTGAAGGCATTGTGCGAGCCAATGGGTGACGTTCTAGAGGTGCGACTAATGAAGGACAAGGACACCGGCGAAAACAGGGGTTATGCTTTTGTGGCTTTTAAAACAAAGGAGGTAGCACAAAAGGCCATTGAAGACATACACAACAAGGAATTTAAGGGCAAAACCTTGAGGTGTTCACTGTCTGAAACGAAACACAGATTGTTCATTAGTAACATTCCAAAGACTTGGACGGAGGATGAGTTCAGGAAACATGTCGAGGCTGTTGGTCCGGGTGTTGAAAACATCGAGCTCATCAAGGACCCCCAAAACCCCACTAGGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGACTATTCGCGGCAAAAGATGTCAATTGCAAGTTTTAAGCTGGGTGGTAATACCCCAAATGTCACATGGGCAGATCCAAAGATCTCACCTGATCATTCTTCATCTTCACAGGTTAAAGCTCTATATGTTAAAAACATACCTGAGAATGTTACTACTGAACAACTAAAAGAACTATTCCGGCGACATGGAGAAGTGACAAAAGTGGTCATGCCACCTGGTAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGCGGTCAAGTGTATTGAAAGCTGTCAAAGATACAGAGAAATATGAAATTAATGGCCAAGTGCTTGAAGTTGTTCTTGCCAAGCCTCAAACTGATAGAAAAGCTGAAGTTAGTTATGCCTACAATCCTGTACTTCATCCAAGCCATCTTATACATCCCGGATATGGTAGTTTTTCTGGAAATCTTTACGGCTCTTTAGCTGCAGGATATGGTGTTGCTACAGGTTATCAACAGCCAATGATTTATGGGAGAGGTCCAATGCCGGCAGGAATGCAGATGGTTCCAATGGTATTACCAGATGGTCAAATCGGCTATGTCCTTCAACAGCCTGGTGTACAGGCACCACCGGCCCGACCTCGCAGAACTGATCGGAACAATGGTCCAAGTGGTCAACCGGGCCGAGCAGGAGGTGGTGGCAGCGAAGAAAGCAACCGTAATAGAAGGTACCGACCCTATTAG | 1434 | 0.4491 | MSEGAEVNERVDIDEENYMEEIDDDVEEQIDDHGQEAPEPPHEHKGSPAEAAAKDQLPEQEQERSDTAAEILQDGQKPSSVNEEDEEKEKHDELLALPPHGSEVFIGGLPRDANEDDLKALCEPMGDVLEVRLMKDKDTGENRGYAFVAFKTKEVAQKAIEDIHNKEFKGKTLRCSLSETKHRLFISNIPKTWTEDEFRKHVEAVGPGVENIELIKDPQNPTRNRGFAFVLYYNNACADYSRQKMSIASFKLGGNTPNVTWADPKISPDHSSSSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSVLKAVKDTEKYEINGQVLEVVLAKPQTDRKAEVSYAYNPVLHPSHLIHPGYGSFSGNLYGSLAAGYGVATGYQQPMIYGRGPMPAGMQMVPMVLPDGQIGYVLQQPGVQAPPARPRRTDRNNGPSGQPGRAGGGGSEESNRNRRYRPY* | 478 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy6g0152 | 477 | Gene3D | - | 265 | 364 | IPR012677 | - | |
| Ahy6g0152 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 182 | 264 | IPR000504 | GO:0003723 | |
| Ahy6g0152 | 477 | MobiDBLite | consensus disorder prediction | 79 | 97 | - | - | |
| Ahy6g0152 | 477 | MobiDBLite | consensus disorder prediction | 13 | 32 | - | - | |
| Ahy6g0152 | 477 | Gene3D | - | 8 | 182 | IPR012677 | - | |
| Ahy6g0152 | 477 | MobiDBLite | consensus disorder prediction | 1 | 101 | - | - | |
| Ahy6g0152 | 477 | SUPERFAMILY | RNA-binding domain, RBD | 182 | 356 | IPR035979 | GO:0003676 | |
| Ahy6g0152 | 477 | CDD | RRM3_hnRNPR_like | 276 | 354 | - | - | |
| Ahy6g0152 | 477 | MobiDBLite | consensus disorder prediction | 435 | 477 | - | - | |
| Ahy6g0152 | 477 | Gene3D | - | 183 | 263 | IPR012677 | - | |
| Ahy6g0152 | 477 | MobiDBLite | consensus disorder prediction | 33 | 70 | - | - | |
| Ahy6g0152 | 477 | SUPERFAMILY | RNA-binding domain, RBD | 97 | 181 | IPR035979 | GO:0003676 | |
| Ahy6g0152 | 477 | SMART | rrm2_1 | 103 | 176 | IPR003954 | GO:0003676 | |
| Ahy6g0152 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 104 | 174 | IPR000504 | GO:0003723 | |
| Ahy6g0152 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 184 | 245 | IPR000504 | GO:0003723 | |
| Ahy6g0152 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 279 | 347 | IPR000504 | GO:0003723 | |
| Ahy6g0152 | 477 | CDD | RRM_SF | 104 | 176 | - | - | |
| Ahy6g0152 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 102 | 180 | IPR000504 | GO:0003723 | |
| Ahy6g0152 | 477 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q | 2 | 475 | - | - | |
| Ahy6g0152 | 477 | SMART | rrm1_1 | 183 | 260 | IPR000504 | GO:0003723 | |
| Ahy6g0152 | 477 | SMART | rrm1_1 | 278 | 350 | IPR000504 | GO:0003723 | |
| Ahy6g0152 | 477 | SMART | rrm1_1 | 103 | 176 | IPR000504 | GO:0003723 | |
| Ahy6g0152 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 277 | 354 | IPR000504 | GO:0003723 | |
| Ahy6g0152 | 477 | PANTHER | GEO13361P1-RELATED | 2 | 475 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy6g0152 | Ahy-Chr6 | 1866171 | 1870122 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy6g0152 | 104 | 408 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.590 | 7.09e-19 | 87.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy6g0152 | K13161 | - | gmx:100790907 | 759.599 |