Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0136 ATGGAGGGTGGGAATAGGGTTCCGGGGTCAGGGGAGGGTGACCCTTCTTACTGGCTGGACGCCTGTGAGGACATATCATGTGATTTCATTGATTTTGATGTGTCTTCAATTGTGTCTGAGCAGCCTGACAACGCTTCCAACCAGGATTTCTTTGGTGGGATTGATCGAATCCTTGATAGCATAAAGAATGGTGGTGGCCTCCCGCTTGATGCCGAATCCAATTCCAATGCTACTGCTGAACCAGCTGCAGCAGCAGCAGCACCACCACCACAACAACCATGGTTGCCTCATGATGCCCCTCCTTCTGCAGTAGCACACTCCAAGCTGCAGCACTCTCTGACTCCACTTCCTGCCTCCAATGGTTCCGCGAAGAATGAATTGGTTGCAGAGAAGCATGGTCGCACGGCAGATGCTTTTCAGCATCCACGGGCTGAAACTAACGGCTGCAATAAGTTGTTGAATGGTAATGATGAAGGGAGAGTTTTGGTTGGTTGTTTTGTGGAAAACGGAGGCCTGAGCAGAGGGCGCGATCAGTTGAGGGAATATGATGTTGATGGTGAAGAGAGATACTGCAAAAGGGCGAGGCTTGGCAACTATAAGAATGACAGGCATTATTCTGGTAGAGTTAATTATCAATTCAAGGAGAAAGAGAGGTGTTTTAATAGGAAGAGGCCTCGGGATAGTAGAGATGAGATTGATGTTAGGAGGGACAAAGATAGTAGCAGGAAAAAAGAACATTATGGCAATTGTGGCTGGAGAGATGTTAGAGATAGGGATTGGAGGGATAGAGAGCAGAGGGGTTACTGGGAAAGGGATAAATTGGGTTCTAATGACATGGTTTTTCGCGTGGGCACTTGGGAAGCCGGTAGGGATCGAGAAGAGAAAATGGCTAATGACACAAAACAGGAAAGCAATGGAAAGCTTGACAAGACATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAGAAAGCTAGACAGTATCAATTGGATGTTCTTGAGCAGGCAAAGACGAAGAATACTATAGCTTTTCTTGAAACCGGAGCAGGGAAGACCCTCATTGCAGTTCTTCTCATCAAAAGTATACACGAGAGTTTGCAAAAGCAAAATAAAAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTCCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACTGGCTATCAAGTGGGTCATTACTGTGGAGAAATGGGTCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTCGACACTAAACATGTCTTAGTCATGACAGCTCAAATTCTTCTGAACATTTTGAGGCATAGCATCATTAAAATGGAAGCAATCAATCTCCTAATTCTTGATGAGTGCCATCATGCTGTTAAGAAACATCCATATTCGCTGGTGATGTCTGAGTTCTACCACACAACTCCTAAAGAGAACAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTAAACTTGAAGGGAGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGAAATCTTGAGAGCAAGCTGGATTCAATAGTTTGTACCATTAAAGATCGCAAGGAGCTGGAGAGACATGTGCCCATGCCCTCTGAAGTTGTGGTGGAGTATGACAAAGCCGGCAGTTTATGTTATCTACATGAGCAAGTAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCGAGTTCAAGGAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGCGCAAAAGAGGAGCTGCGACAAGTATATGGTGTTTCTGAGAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATCAATTATGCACTTGGTGAACTGGGGCAGTGGTGTGCATTTAAGGTTGCCCAATCTTTTCTAGCAGCTTTGCAGAATGATGAAAGGGCTAACTACCAACTAGATGTCAAGTTTCAGGAATCTTATCTTAGCAAAGTTGTCTCTCTTCTGAAATGTCAGTTGTCAGAGGGTGCAGTTTCTGACAAACATGCTGAAGTTGATGACTCAAAGCATGAAACAACTTGCAATGGGACTGAACCTGAAGAGATTGAGGAAGGAGAACTTCCAGACAGTCATGTTGTCTCTGGTGGGGAGCATGTGGATGTCATAATAGGAGCAGCTGTAGCTGATGGGAAGGTGACCCCCAAGGTGCAGGCACTCATCAAAATACTACTGAAGTATCAGAACACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTACCGAAGGTCTTTGCAGAGCTCCCATCTCTTAGTTTTGTGAAATGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCCAAGTTCCGTGATGGGAGGGTTACATTGTTAGTTGCTACTAGTGTTGCTGAAGAAGGGCTTGATATCCGGCAATGCAATGTCGTTATTCGCTTTGACCTTGCAAAGACTGTTCTGGCATACATTCAATCTAGGGGTCGTGCTAGAAAGCCTGGGTCTGATTACATCCTGATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTTAGGAATGCAAGAAACAGCGAGGAGACCTTACGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGATTGATTTCAGTAGATACCCGACCGGGAACAGTTTACCAGGTCAAGTCAACCGGGGCAGTTGTGAGCTTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGTTCCCAACTACCAAGCGACAGGTATTCAATTCTTCGCCCTGAGTTTATCATGGAGAAGCATGAAAAACCAGGATGTCCCACTGAATATTCTTGCAAGCTTCAACTACCTTGTAATGCGCCATTTGAAAATCTTGAGGGTCCTATCTGCAGTTCAATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCGGACAAAGGAAGTGGGGGAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGGGATCCACTTCCAGGGACTGCTAGACACAGGGAGTTCTATCCTGAAGGTGTGGCTGACACACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTACAACAATTCCAAATTGTTTCATCTTTATATGTATTCCGTGGAGTGCGAAAATGTAGGAATTTCAAAGGATCCGTTCTTAACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGGCATCTCTTGTCTTTAGAGGGTCAATAGATATCAGTGAGAGTCAGTTGGCGACCCTGAAAAGCTTTCATGTAAGGTTAATGAGCATTGTCTTGGATGTGGATGTTGAACCTTCTACCACTCCTTGGGATCCCGCAAAAGCATATTTATTTGTCCCAATGATTAGCGATAAGTCTGTAGATCCTGTGAAACAAATTGACTGGTTTATGGTCGAGACAATAATTGGATCGGATGCATGGAAAAATCCCCTCCAGAAGGCTCGGCCAGATGTTTACCTTGGTACTAATGAGAGAACTTTAGGTGGAGACAGAAGGGAGTATGGATTTGGAAAATTGCGTCATGGCATGGCGTTTGGGCAAAAAGCACATCCAACCTATGGAATCAGAGGAGCTGTAGCCCAGTTTGATGTGGTAAAAGCTTCAGGATTGGTTCCTAACAGAGATGCCATCCAAACACAAAAACATATCAGTTTGACGACCAAAGGAAAATTGATGATGGCGGATACTTGTACTAACGCAGAGGATCTGGTTGGGAAAATTGTAACTGCTGCACACTCTGGGAAGAGGTTTTATGTTGATTCAATACGTTATGATATGTCTGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTCGAGTACAGTTCATATGCTGATTATTACAAGCAAAAGTATGGGGTTGATTTGATTTACAAGCATCAACCGCTTATAAGAGGGCGTGGTGTGTCATACTGTAAGAATCTTCTTTCCCCTCGATTCGAACACAGTGAAGCACATGAAGGAGAATCTGAAGAATCTCATGACAAAACATATTACGTGTTCCTTCCTCCTGAACTATGCCTAGTACACCCTCTTCCTGGATCACTTGTTCGGGGTGCCCAGAGATTGCCTTCAATCATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAGCTTAGGAATATGATAAATTATCCTGTGCAGGCTTTGAAGATCTTGGAGGCCTTGACTGCTGCATCTTGTCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTTGGAGATGCTTACCTGAAATGGGTCGTTAGTCGATTTCTTTTCCTAAAATACCCGCAGAAACATGAGGGCCAACTTACTAGGATGAGGCAACAAATGGTCAGCAACATGGTTTTATATCAGTATGCATTAAGTAAAGGCCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCAAGATGGGCGGCTCCTGGGGTGCTGCCTGTCTTCGATGAGGATACCAAGGATGGAGAGTCAACTTTATTTGACCAGGATACATCCATTTCTAACACTGAGAGAATGGATTGTCACACTGATGAATATGAAGATGAGCTGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTACTGTCCAGCAAGACACTTGCTGATGTTGTGGAAGCACTCATTGGTGTATATTATGTCCAAGGAGGTAAGCGTGCCGCTAACCACCTTATGAAATGGATTGGCATTCAGATAGAGTTTGATCCTGCTGATGAGATGGACTGTGCAAGAAAGCCTTTCAATGTTCCAGAGAGCATACTTAGGAGTGTTGATTTTGATGCATTAGAAGGTGCTTTGAATATGAAGTTTAAAGACAGGGGGCTTCTGGTAGAAGCCATTACTCATGCGTCCAGACCATCATCAGGGGTATCCTGTTATCAGCGGTTGGAATTTGTTGGTGATGCAGTTTTGGACCATCTTATTACCAGGCATTTGTTTTTCACTTACACAAATTTGCCACCGGGACGATTGACTGACCTTCGGGCTGCTGCTGTAAATAATGAAAATTTTGCTCGTGTTGCAGTTAAACACAATCTTCATGTGCATCTCCGACATGGGTCTAGTGCCTTAGAAAAGCAGATCAAAGAATTTGTCAAGGAAGTTCAGGATGAATTGTCAAAACCGGGATTTAACTCCTTTGGCCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCTGGCTCCATTTTTCTTGATAGTGGAAGGGATACTACTCTCGTTTGGAAGGTTTTTCAGCCTCTATTGCATCCCATGGTTACACCAGAGACTCTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCCGAAGGCTTAGAATACAGAGCAAGTCGTGTTGGCAATCTGGCCACTGTTGAAGTATTCATTGATGGCGTGCAAGTTGGGGCCGCTCAAAATCCACAAAAGAAAATGGCTCAGAAATTAGCTGCCAGAAATGCCCTAGCTGCTTTGAAAGAAAAGGAGGTGGCAAAGAATCAGAAGAATGATGAAAATGGGAAAAAGAATGGAAACCAAACATTTACCAGACAAACATTAAACGATATTTGTTTGCGAAGAAATTGGCCTATGCCATTCTATCGATGTGTGAATGAGGGCGGTCCAGCACATGCGAAGCGTTTCACATTTGCGGTGCGCGTCAATACTACTGATAGAGGATGGACAGATGAATGTGTTGGAGAGCCAATGCCCAGTGTCAAGAAGGCCAAAGACTCTGCTGCTGTTCTTCTCTTAGAACTACTAAATAAATTATACTCATGA 5952 0.4422 MEGGNRVPGSGEGDPSYWLDACEDISCDFIDFDVSSIVSEQPDNASNQDFFGGIDRILDSIKNGGGLPLDAESNSNATAEPAAAAAAPPPQQPWLPHDAPPSAVAHSKLQHSLTPLPASNGSAKNELVAEKHGRTADAFQHPRAETNGCNKLLNGNDEGRVLVGCFVENGGLSRGRDQLREYDVDGEERYCKRARLGNYKNDRHYSGRVNYQFKEKERCFNRKRPRDSRDEIDVRRDKDSSRKKEHYGNCGWRDVRDRDWRDREQRGYWERDKLGSNDMVFRVGTWEAGRDREEKMANDTKQESNGKLDKTSEEAKERVPEEKARQYQLDVLEQAKTKNTIAFLETGAGKTLIAVLLIKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELERHVPMPSEVVVEYDKAGSLCYLHEQVKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAFKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKHAEVDDSKHETTCNGTEPEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGCPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKAEQNDEGDPLPGTARHREFYPEGVADTLKGEWILSGKDAYNNSKLFHLYMYSVECENVGISKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFRGSIDISESQLATLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMISDKSVDPVKQIDWFMVETIIGSDAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKAHPTYGIRGAVAQFDVVKASGLVPNRDAIQTQKHISLTTKGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKHQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEESHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLRNMINYPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESTLFDQDTSISNTERMDCHTDEYEDELEDGELESDSSSYRVLSSKTLADVVEALIGVYYVQGGKRAANHLMKWIGIQIEFDPADEMDCARKPFNVPESILRSVDFDALEGALNMKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGSIFLDSGRDTTLVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRVGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVAKNQKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS* 1984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0136 1983 ProSiteProfiles Ribonuclease III family domain profile. 1647 1795 IPR000999 GO:0004525|GO:0006396
Ahy6g0136 1983 MobiDBLite consensus disorder prediction 674 697 - -
Ahy6g0136 1983 Pfam Ribonuclease III domain 1682 1795 IPR000999 GO:0004525|GO:0006396
Ahy6g0136 1983 Pfam Ribonuclease III domain 1459 1605 IPR000999 GO:0004525|GO:0006396
Ahy6g0136 1983 CDD PAZ_CAF_like 1255 1404 - -
Ahy6g0136 1983 Pfam PAZ domain 1284 1422 IPR003100 GO:0005515
Ahy6g0136 1983 MobiDBLite consensus disorder prediction 1005 1032 - -
Ahy6g0136 1983 SMART ultradead3 320 523 IPR014001 -
Ahy6g0136 1983 SMART PAZ_2_a_3 1266 1426 IPR003100 GO:0005515
Ahy6g0136 1983 Gene3D Ribonuclease III domain 1424 1619 IPR036389 GO:0004525|GO:0006396
Ahy6g0136 1983 CDD RIBOc 1663 1818 IPR000999 GO:0004525|GO:0006396
Ahy6g0136 1983 Gene3D - 318 562 IPR027417 -
Ahy6g0136 1983 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 331 508 IPR014001 -
Ahy6g0136 1983 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 278 1981 - -
Ahy6g0136 1983 SUPERFAMILY RNase III domain-like 1646 1816 IPR036389 GO:0004525|GO:0006396
Ahy6g0136 1983 Gene3D - 1819 1897 - -
Ahy6g0136 1983 Gene3D paz domain 1279 1400 - -
Ahy6g0136 1983 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1905 1980 IPR014720 -
Ahy6g0136 1983 SMART riboneu5 1441 1625 IPR000999 GO:0004525|GO:0006396
Ahy6g0136 1983 SMART riboneu5 1662 1818 IPR000999 GO:0004525|GO:0006396
Ahy6g0136 1983 MobiDBLite consensus disorder prediction 68 107 - -
Ahy6g0136 1983 CDD DEXHc_dicer 323 522 - -
Ahy6g0136 1983 MobiDBLite consensus disorder prediction 674 689 - -
Ahy6g0136 1983 SUPERFAMILY PAZ domain 1281 1402 IPR036085 GO:0005515
Ahy6g0136 1983 Pfam Dicer dimerisation domain 919 1007 - -
Ahy6g0136 1983 MobiDBLite consensus disorder prediction 1008 1032 - -
Ahy6g0136 1983 CDD DSRM_DCL_plant 1911 1972 - -
Ahy6g0136 1983 SUPERFAMILY dsRNA-binding domain-like 1777 1900 - -
Ahy6g0136 1983 SUPERFAMILY dsRNA-binding domain-like 1909 1979 - -
Ahy6g0136 1983 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 919 1014 IPR005034 GO:0016891
Ahy6g0136 1983 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1821 1884 IPR014720 -
Ahy6g0136 1983 CDD RIBOc 1443 1623 IPR000999 GO:0004525|GO:0006396
Ahy6g0136 1983 MobiDBLite consensus disorder prediction 224 247 - -
Ahy6g0136 1983 SMART helicmild6 760 846 IPR001650 -
Ahy6g0136 1983 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1905 1978 - -
Ahy6g0136 1983 Gene3D Dicer dimerisation domain 914 1015 IPR038248 -
Ahy6g0136 1983 Gene3D Ribonuclease III domain 1644 1818 IPR036389 GO:0004525|GO:0006396
Ahy6g0136 1983 ProSitePatterns Ribonuclease III family signature. 1682 1690 IPR000999 GO:0004525|GO:0006396
Ahy6g0136 1983 PANTHER DICER-RELATED 278 1981 - -
Ahy6g0136 1983 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 891 IPR001650 -
Ahy6g0136 1983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 858 IPR027417 -
Ahy6g0136 1983 Pfam Type III restriction enzyme, res subunit 326 490 IPR006935 GO:0003677|GO:0005524|GO:0016787
Ahy6g0136 1983 SMART DRBM_3 1822 1883 IPR014720 -
Ahy6g0136 1983 SMART DRBM_3 1906 1979 IPR014720 -
Ahy6g0136 1983 ProSiteProfiles PAZ domain profile. 1262 1402 IPR003100 GO:0005515
Ahy6g0136 1983 Coils Coil 1875 1895 - -
Ahy6g0136 1983 ProSiteProfiles Ribonuclease III family domain profile. 1445 1605 IPR000999 GO:0004525|GO:0006396
Ahy6g0136 1983 SUPERFAMILY RNase III domain-like 1418 1623 IPR036389 GO:0004525|GO:0006396
Ahy6g0136 1983 MobiDBLite consensus disorder prediction 291 320 - -
Ahy6g0136 1983 Gene3D - 1911 1981 - -
Ahy6g0136 1983 CDD SF2_C_dicer 724 854 - -
Ahy6g0136 1983 Gene3D - 717 883 IPR027417 -
Ahy6g0136 1983 Pfam Helicase conserved C-terminal domain 727 844 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0136 Ahy-Chr6 1736911 1748004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0136 743 886 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.92e-06 50.8