Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0135 ATGGAAGAAGAAGTGAAAGGATATTCCGATAGCAGAGAAGAGGAGGAGGAGGAGGAGGAAGACGAAGCAGCGGAAATCATCCCAATTCCAAACACAAGACAAGAAACCAACAGCAGCGGAAACAGGTTACAGCAGCAGCAAGATACAGCAGTAGCTCCCAATTTCAGTCAGCGGAAGCAGCTAGATTTGATGGAGTTGTCACTAGGGAGCGGGAGCAGCAAGGACGATCGGAATTGGCAGCAAGGAGGAGGAGGAGGAGGAGGAATGGTTGGTTCTTGCTCATCATCATCATCGGAGGCGGTGGAGAAAGAGCACATGTTCGACAAAGTGGTGACCCCAAGCGACGTAGGGAAGCTGAACAGGCTAGTGATACCGAAGCAGCACGCGGAGAAGTACTTTCCATTGGACTCATCCTCCAACGATAAGGGGCTTCTCCTCAACTTCGAGGACAGGAACGGCAAGCTGTGGCGCTTCAGATACTCCTACTGGAACAGCAGCCAGAGCTATGTTATGACCAAAGGCTGGAGCCGCTTCGTTAAGGAGAAGAAGCTCGACGCCGGCGACATTGTCTCCTTCCACCGCGGCCTCGGGGAACTCTATAGACACAGGCTGTACATTGACTGGAGGCGCAGGCCCGACCATCCCCCTCCTGACCCTTCCGCCTCCCTCATCTCCCCTTTCTTCCTTCCTAACCACTACTCCGCCGCCATCACATGGGGCGCCGGCGGCAGGTTCTACTCTCTGCCTTCTCCCACGCCTCCTCCTCGCCACCATCACTTTCATCATCATCAGCACCACCCCCTCGCTACTAATTACAACACCCATATGTATGGCTTTCATCATCATCCAGGTGCTGCAGCAACTGGAACAAGTCATCATCTTCTCAGCGGTTACAACGATCAGCAGCTGAATTCCGGATCTCCTGGACCTCTCTATTACCTGAGGTCACCCCCCTCAATGTCAATTGTTGACCCCAACTTGCATCAGGAGAGAGGGACTGCTATTGCCCCCATGATCATTGATTCTGTGCCGGTTGCTCATCATCATCATCAACAACAGCAACATCAACATGGTGTGGTGCCTAATAGTAGTAACTTTGACAGTACTAATACCGCAGGAAAACGGCTGAGGCTATTTGGGGTCAACATGGAATGTGCTTCTTCTTCTTCTTCTTCTCCAGCTGAAGATCACTCGCATTTGGCAATGTCTAGTTCATTACCATCGTCAAGCAGGTTTGGGGATCAGAGAGGGGATACTACTACTACTACTACTTCTGTACTTTTTGATTTGGATCCCTCTTTGCAATACCATCACCACCACCGGCATTGA 1329 0.5139 MEEEVKGYSDSREEEEEEEEDEAAEIIPIPNTRQETNSSGNRLQQQQDTAVAPNFSQRKQLDLMELSLGSGSSKDDRNWQQGGGGGGGMVGSCSSSSSEAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGLGELYRHRLYIDWRRRPDHPPPDPSASLISPFFLPNHYSAAITWGAGGRFYSLPSPTPPPRHHHFHHHQHHPLATNYNTHMYGFHHHPGAAATGTSHHLLSGYNDQQLNSGSPGPLYYLRSPPSMSIVDPNLHQERGTAIAPMIIDSVPVAHHHHQQQQHQHGVVPNSSNFDSTNTAGKRLRLFGVNMECASSSSSSPAEDHSHLAMSSSLPSSSRFGDQRGDTTTTTTSVLFDLDPSLQYHHHHRH* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0135 442 SUPERFAMILY DNA-binding pseudobarrel domain 104 212 IPR015300 -
Ahy6g0135 442 Pfam B3 DNA binding domain 107 211 IPR003340 GO:0003677
Ahy6g0135 442 MobiDBLite consensus disorder prediction 30 79 - -
Ahy6g0135 442 MobiDBLite consensus disorder prediction 386 420 - -
Ahy6g0135 442 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 23 410 - -
Ahy6g0135 442 MobiDBLite consensus disorder prediction 355 369 - -
Ahy6g0135 442 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 410 IPR044800 GO:0003700
Ahy6g0135 442 SMART B3_2 107 212 IPR003340 GO:0003677
Ahy6g0135 442 CDD B3_DNA 105 194 IPR003340 GO:0003677
Ahy6g0135 442 MobiDBLite consensus disorder prediction 1 95 - -
Ahy6g0135 442 MobiDBLite consensus disorder prediction 346 369 - -
Ahy6g0135 442 Gene3D - 100 215 IPR015300 -
Ahy6g0135 442 ProSiteProfiles B3 DNA-binding domain profile. 107 212 IPR003340 GO:0003677
Ahy6g0135 442 MobiDBLite consensus disorder prediction 9 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0135 Ahy-Chr6 1667021 1669425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0135 97 388 RAV Transcription Factor Family AT2G46870 48.173 9.92e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy6g0135 B3 4.90E-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0135 - - lja:Lj3g3v2520080.1 372.859