Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0106 ATGGGTGACTCGTCGGTGCCAAGTGACAAGTTGGGTGAGTCTCCGGCGGTTGAGTTAACGGGCAAGATCATGGTGGTGGCCGTAATAGTGTTGTTCATGGTGGTTGTGTTCGTGCTGTTCCTCCATCTCTACGCCAAATGGTTCTGGTGGAGCATTGGAGAGAGCAACATTCCCCAACCCAGAAGGCGGCGGCGGCGCTTTGTGTTTGCTCCTGGTCAAGACCCGGCCAGCTCCGGCGGTGTCCGAAGAGGCCTTGAGCCTTCTGTGCTGAGATCCCTGCCGGTGTTGGTTTTCCAGCCGCAAGATTTCAAGGAAGGTATGGAATGTGCGGTTTGCCTTTCGGAGGTTGAAGAGGGAGAAAAGGCGAGGCTGTTACCAAAGTGCAATCATGGCTTCCACGTGGATTGCATTGATATGTGGTTCCAATCCCATTCCACTTGCCCCCTCTGCAGAAACCCTGTGACCTCTGCCACCGAATCTTCTTCTGATGCAGCTTTCCCCACAAATGTCTTCGTTTGGGGGAACCAGACCCAAGTGAGTTCTTCTTTGGAGGAAACTACTACTTCTTCCTCCTCGTCATCTTCAGCTAGCAGCAGTGACAGAGTTCATCATCATGGCGGTGGATCGTTGGTGATTGATATACCAAGCGAGATCACTTCATCTTCTGCAAGCAGGTTTGCAGAAGAAGATGAGATGAAATCTCCCATTACAGGGAGACTGAAATCATTGAAGAGGCTGTTAAGCAGGGACAGGAGGATGAATCCTTCTAGTCCACGTTCTATAGACCTTGAACATGCAACGGGATCAGGGCAGAGCTCTAGTTAG 825 0.5139 MGDSSVPSDKLGESPAVELTGKIMVVAVIVLFMVVVFVLFLHLYAKWFWWSIGESNIPQPRRRRRRFVFAPGQDPASSGGVRRGLEPSVLRSLPVLVFQPQDFKEGMECAVCLSEVEEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVTSATESSSDAAFPTNVFVWGNQTQVSSSLEETTTSSSSSSSASSSDRVHHHGGGSLVIDIPSEITSSSASRFAEEDEMKSPITGRLKSLKRLLSRDRRMNPSSPRSIDLEHATGSGQSSS* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0106 274 MobiDBLite consensus disorder prediction 224 258 - -
Ahy6g0106 274 SMART ring_2 109 150 IPR001841 -
Ahy6g0106 274 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Ahy6g0106 274 MobiDBLite consensus disorder prediction 260 274 - -
Ahy6g0106 274 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 259 IPR044675 -
Ahy6g0106 274 MobiDBLite consensus disorder prediction 182 202 - -
Ahy6g0106 274 Pfam Ring finger domain 108 151 IPR001841 -
Ahy6g0106 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 161 IPR013083 -
Ahy6g0106 274 CDD RING-H2_EL5_like 108 151 - -
Ahy6g0106 274 PANTHER RING-H2 FINGER PROTEIN ATL3 5 259 - -
Ahy6g0106 274 SUPERFAMILY RING/U-box 89 158 - -
Ahy6g0106 274 MobiDBLite consensus disorder prediction 182 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0106 Ahy-Chr6 1424841 1426252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0106 18 254 C3H Transcription Factor Family AT1G53820 39.456 3.94e-58 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0106 - - adu:107491762 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0163 16 1743187 1744618 Ahy6g0106 6 1424841 1426252 hybridization
Ahy6g0106 6 1424841 1426252 Ahy12g0810 12 14610432 14611944 PCT
Ahy6g0106 6 1424841 1426252 Ahy9g1375 9 58110916 58115404 PCT
Ahy12g0810 12 14610432 14611944 Ahy6g0106 6 1424841 1426252 PCT
Ahy9g1375 9 58110916 58115404 Ahy6g0106 6 1424841 1426252 PCT