Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0088 ATGGGGCTTCGAGACATAGGAGCATCACTTCCACCAGGGTTCAGATTCTACCCGAGTGATGAGGAATTGGTTTGCCATTATCTTTATAAGAAGATCACAAACCAGCAACTTCTTAAAGGCACTCTTATTGAGATTGATTTACACATATGCGAGCCATGGCAGCTTCCAGAGGTGGCAAAGCTAAATGCAAATGAATGGTACTTCTTCAGCTTCAGAGACAGGAAATATGCGACGGGGTTCAGAACGAACAGAGCGACGACAAGTGGTTATTGGAAAGCAACGGGGAAGGATCGAACGGTGCAGGATCCACTTACGCAAGAGGTTGTAGGGATGCGGAAGACTCTGGTGTTCTACCGGAACAGAGCTCCCAATGGCATCAAAACTGGCTGGATCATGCATGAGTTTCGGTTGGAGACCCCACACATGCCCCCTAAGGAAGATTGGGTGTTGTGTAGAGTGTTCCACAAAAGCAAAGAAGAAAACAGTGGCAAACTTATCATGTATGATTCCATTTCCACACATCATGAATCATCAAACTCTATGGCATTGGTATCAACCCATCTTTTGAACCCCATCAACAACCATAATGCCATGAATAATTTCCTTCATCACTTCTCATCATCAAGGGATGATAGTCAAACAAATAACGCCAATAATAATAATAATAATAATAGTCCCAAGGGTTATGATGGATATGGCTTCATATGGGATCACATGGATCTTGAAGATCATAGTGTGCCCTCATCAGATTTCCAGGTCGACAATAATAATAATAATAATAATATTGCATTGCTATAA 798 0.4211 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNQQLLKGTLIEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVQDPLTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENSGKLIMYDSISTHHESSNSMALVSTHLLNPINNHNAMNNFLHHFSSSRDDSQTNNANNNNNNNSPKGYDGYGFIWDHMDLEDHSVPSSDFQVDNNNNNNNIALL* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0088 265 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 248 - -
Ahy6g0088 265 MobiDBLite consensus disorder prediction 205 226 - -
Ahy6g0088 265 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Ahy6g0088 265 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 248 - -
Ahy6g0088 265 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Ahy6g0088 265 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Ahy6g0088 265 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0088 Ahy-Chr6 1217789 1221816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0088 6 205 NAC Transcription Factor Family AT1G56010 50.000 2.01e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy6g0088 NAM 1.70E-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0088 - - ahf:112754075 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1368 16 27133146 27135458 Ahy6g0088 6 1217789 1221816 hybridization
Ahy6g0088 6 1217789 1221816 Ahy12g0936 12 19289911 19296469 PCT
Ahy6g0088 6 1217789 1221816 Ahy2g0800 2 14868434 14874831 PCT
Ahy12g0936 12 19289911 19296469 Ahy6g0088 6 1217789 1221816 PCT
Ahy2g0800 2 14868434 14874831 Ahy6g0088 6 1217789 1221816 PCT