Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0066 ATGAAAGCACACCCTGCAAAGCAACTCAATAACATGGGGATGTCAGGAGCACTTCCTTCCTCGTTGGCCGGCCTTCCACCGTCTCTAGAAGATACATACTCCAAATTATCTGATTCACAGCCTACTTTTGTGGAAAATGAGCTTACAACAAGACCTTTTACTCATTCAAGTTCTAGTGGAGTAGTTGGGCCTATGTTTTCTTCTTCTCCGGGATATTCAACCGATCTTCATCATTCATCCCTTTCACCTCATGATAAACAATCTAAAAATACTCATTTTTTGTCACCGACATTCGGTAACATTGCTTCGTTGCCATTACCTTATTCTTCAAATAATGGACCAATACCTTCGACCACACCAACCCATTATTCCAAAGGAAACAGTGCTTCCTGGCATGCAAATTCCCTGAATAGCTTTCTTGATTTGCCCACTAGTAACCCCATTGACCGCAGTCAAGTAGAAAGCAGTGCCTGCAATATTATGGCATCTGAGGATTATTCTAAGCAAAATAATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGACGATGACACTTTGACTTCAAATTGGAATGATATTCTTGTTGACAACATTCAAGATCTTGAACCAAAGGTTCCAAAATCATCTTCACAATTTCCAGCAGGCCATCAACAACTACCTGCTTCATCTGGAGAAAATCATGTGGGTGCCACGCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGCCCCGGATGCGTTGGACACCCGAGCTTCATGAGGCCTTTGTGGATGCTGTCAATCAACTAGGTGGGAGTGAAAGAGCTACTCCTAAGGGCGTGCTGAAACTCATGAAAGTTGAAGGACTAACTATATACCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGATCTTCTGAGAAAAAACTAGGTACCATTGAAGAGATGCCATCTTTAGATTTGAAGACTGGTATTGAAATCACTGAAGCTCTGCGAATGCAGATGGAGGTTCAGAAGCGCTTGCACGAGCAGCTTGAGATTCAAAGAAATCTACAGTTACGTATAGAAGAACAAGGAAGGTATCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGGTGGCATTGAACCATTCAAGGCATCATCATCTGCCATTGATAGTACATCTGGAGTGTCCTCTGATGCCATGAAAGATTCACCTGCCAAAAGTGAAATGGAAGCCACCCCAGTGGACCTTTGCAGTTCAGCGCCTCATCAAGCTAATGGCAATGCCACAGCTGAGAAAAAATCACTGGAAGTGAGTGGGAAGCAAGATGCTCCCGAAGATCCTAAGCAACTTGCTTCTGAAAGTGAAGATAGTGGTCATCCCCCAAAGCGTCCGAGGACAGATGAGTGA 1401 0.4375 MKAHPAKQLNNMGMSGALPSSLAGLPPSLEDTYSKLSDSQPTFVENELTTRPFTHSSSSGVVGPMFSSSPGYSTDLHHSSLSPHDKQSKNTHFLSPTFGNIASLPLPYSSNNGPIPSTTPTHYSKGNSASWHANSLNSFLDLPTSNPIDRSQVESSACNIMASEDYSKQNNWQEWADQLISDDDTLTSNWNDILVDNIQDLEPKVPKSSSQFPAGHQQLPASSGENHVGATPSSSANSAPAKPRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGSSEKKLGTIEEMPSLDLKTGIEITEALRMQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGGIEPFKASSSAIDSTSGVSSDAMKDSPAKSEMEATPVDLCSSAPHQANGNATAEKKSLEVSGKQDAPEDPKQLASESEDSGHPPKRPRTDE* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0066 466 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 242 296 IPR006447 GO:0003677
Ahy6g0066 466 MobiDBLite consensus disorder prediction 204 244 - -
Ahy6g0066 466 Pfam MYB-CC type transfactor, LHEQLE motif 327 374 IPR025756 -
Ahy6g0066 466 Gene3D - 241 300 - -
Ahy6g0066 466 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 43 466 IPR044848 GO:0003700
Ahy6g0066 466 MobiDBLite consensus disorder prediction 377 466 - -
Ahy6g0066 466 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 43 466 - -
Ahy6g0066 466 MobiDBLite consensus disorder prediction 383 398 - -
Ahy6g0066 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 299 IPR017930 -
Ahy6g0066 466 MobiDBLite consensus disorder prediction 204 241 - -
Ahy6g0066 466 MobiDBLite consensus disorder prediction 32 78 - -
Ahy6g0066 466 MobiDBLite consensus disorder prediction 433 466 - -
Ahy6g0066 466 MobiDBLite consensus disorder prediction 296 315 - -
Ahy6g0066 466 MobiDBLite consensus disorder prediction 416 432 - -
Ahy6g0066 466 Pfam Myb-like DNA-binding domain 244 295 IPR001005 -
Ahy6g0066 466 SUPERFAMILY Homeodomain-like 240 296 IPR009057 -
Ahy6g0066 466 MobiDBLite consensus disorder prediction 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0066 Ahy-Chr6 958115 963952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0066 1 408 G2-like Transcription Factor Family AT4G28610 47.002 3.88e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ahy6g0066 Myb_DNA-binding 1.50E-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1400 16 28272168 28278009 Ahy6g0066 6 958115 963952 hybridization
Ahy6g0066 6 958115 963952 Ahy12g0989 12 21030820 21036357 PCT
Ahy6g0066 6 958115 963952 Ahy9g1320 9 45174350 45178775 PCT
Ahy12g0989 12 21030820 21036357 Ahy6g0066 6 958115 963952 PCT
Ahy9g1320 9 45174350 45178775 Ahy6g0066 6 958115 963952 PCT