Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0037 ATGGCTGATGGGGCTGGTGATGATTTGTTTAAAGAGCTATGGAGGTTGTGTGCAGGGCCATTAATGGATGTTCCTTGTGTTCAAGACATAGTTTTCTATTTCCCTCAGGGTCACATTGAATTGTTGCCAGAACCTACAGAACAAGAATTGAGGCAGATGAAGAACCAGAAATCTCCCAAATACGATCTTCCGTCGAAGATCTTATGCCGTGTTATCGATGTTAAGTGTCTGGCCGAGATGGAAACCGACGAGGTTTATGCTCGAATCACTTTGCAGCCATCTTCAGATGATATGACAATGGAAAATCCTACTCAGGAGTTGGTAGCAAAGGATATTCATGGGGTTGAATGGAAGTTTAAGCATATATACAGAGGACATCCGAAGAGGCACCTGCTTACAACTGGCTGGAGTGCATTCGTTGCGGCCAAGAAATTGGTTGTCGGAGATTCTTTTGTTTTTCTAAGGGGAGAGAATGGACAACTGAGAGTAGGCGTTAGGCGTTTGAATCCGCCGCAGAGTCCTACACCTTCCTCGGTGGTGTCGACACAAAACATGCGCCTCGGAGTGATTGTTACTGCGAGCCATTCTGTTATGACTAGTACCATGTTTGTGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTAGTTTAAACAAATATATTGACACGATGAACAATGACTTCAAAATCGGAATGCGATTCAAGATGAGACATGAGGGTGAAGATCCACTTGACAAAAGGTTTTGTGGTACTATAGTTGGAGTTGGAGATGAATCTCAAGAATGGCTAAATTCTCAATGGAGGTCATTGAAGGTTCGATGGGATGAACCAGCAACAATGCAAAGACCAGATAGAGTTTCATGTTGGGAGATTGAACCTCTTGTTACTTCGCCTTTGAATATGATTCAACCGATGGCGAAGGGAAAGAGATCAAGGCATGCTGAGGCTTCATCTTCTGGTAGCAAAGAAAGCCAAGTAGCTACAATATGGCAGCCACCACATTTGAATGGCAATGGAAATTCTTCTCAAGACCCCGAAAACAACAAAGCCGTCGTCCTGGCCGGTCCAGCTGGCGAAGGCCCGGCATGCGACCACAACGAAGACGGGAAGAAGGGCATGGATTGCTGGTTGTTTGGGGTGAATTTGACTAGCAGCTATAGTAATGTTGTTACTCCTTTGGAGAAAGAACTTTGGTGTGAAGCTTCAACTATCCTTCATTGTGGTCCCAAAGAATCTATTATTGTTGGTGCATGTGAGACTGAGAAGGTTCAGAGTCTCAATAACCATTCACTGTCCAACAAGCAGGGCCATGTACCATCCATGAGGACTAGGACTAAGGTGAAAATGGAAGGTGTAGCAGTTGGTCGTGCAATTGACTTGACCACAATAAATGGTTATGATGAACTCATAGTTGAGCTTGAGAAAATGTTTGACATTGAAGGAGAAATTATATCTCAGAAGAAATGGGCTGTTACTTTCACTGATGAAGAAAATGACCTTATGCTTCTTGATGATGATTTATGGCAGGACTTCTGCAAAATGGTGAAGAGGATTTTCATTTGTTCAAAGGAGGATTAA 1581 0.4326 MADGAGDDLFKELWRLCAGPLMDVPCVQDIVFYFPQGHIELLPEPTEQELRQMKNQKSPKYDLPSKILCRVIDVKCLAEMETDEVYARITLQPSSDDMTMENPTQELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVVGDSFVFLRGENGQLRVGVRRLNPPQSPTPSSVVSTQNMRLGVIVTASHSVMTSTMFVVYYKPRTSQFIVSLNKYIDTMNNDFKIGMRFKMRHEGEDPLDKRFCGTIVGVGDESQEWLNSQWRSLKVRWDEPATMQRPDRVSCWEIEPLVTSPLNMIQPMAKGKRSRHAEASSSGSKESQVATIWQPPHLNGNGNSSQDPENNKAVVLAGPAGEGPACDHNEDGKKGMDCWLFGVNLTSSYSNVVTPLEKELWCEASTILHCGPKESIIVGACETEKVQSLNNHSLSNKQGHVPSMRTRTKVKMEGVAVGRAIDLTTINGYDELIVELEKMFDIEGEIISQKKWAVTFTDEENDLMLLDDDLWQDFCKMVKRIFICSKED* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0037 526 Gene3D - 228 299 - -
Ahy6g0037 526 SUPERFAMILY DNA-binding pseudobarrel domain 93 194 IPR015300 -
Ahy6g0037 526 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 96 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy6g0037 526 PANTHER AUXIN RESPONSE FACTOR 11 365 526 - -
Ahy6g0037 526 Gene3D - 68 168 IPR015300 -
Ahy6g0037 526 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 97 334 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy6g0037 526 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 365 526 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy6g0037 526 PANTHER AUXIN RESPONSE FACTOR 11 4 96 - -
Ahy6g0037 526 SMART B3_2 86 169 IPR003340 GO:0003677
Ahy6g0037 526 MobiDBLite consensus disorder prediction 305 327 - -
Ahy6g0037 526 Pfam Auxin response factor 193 272 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy6g0037 526 Pfam B3 DNA binding domain 103 167 IPR003340 GO:0003677
Ahy6g0037 526 Gene3D - 439 526 - -
Ahy6g0037 526 PANTHER AUXIN RESPONSE FACTOR 11 97 334 - -
Ahy6g0037 526 ProSiteProfiles B3 DNA-binding domain profile. 106 169 IPR003340 GO:0003677
Ahy6g0037 526 CDD B3_DNA 101 167 IPR003340 GO:0003677
Ahy6g0037 526 Pfam AUX/IAA family 435 479 IPR033389 -
Ahy6g0037 526 ProSiteProfiles PB1 domain profile. 443 524 IPR000270 GO:0005515
Ahy6g0037 526 SUPERFAMILY CAD & PB1 domains 437 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0037 Ahy-Chr6 612853 616693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0037 4 521 B3 DNA Binding Superfamily AT2G46530 45.941 9.23e-167 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy6g0037 Auxin_resp 2.80E-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0037 K14486 - gmx:100795763 620.542