Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g0004 ATGATGGCGTTCTTCAGTGGAGCTCAGCGATTTCTTTGGCAGTCTTCTTCAGTTGTGGCCTCCCACTTCACCCCTACTCGTTTCACTTCGACTCTTACTTCCCCAAAACTCTTCATCAGCGGTCTTTCAAGACTGACAACAGATGAAAAACTTACTGAAGCGTTTTCTCCTTTCGGGCAGCTGCTTGAAGCAAAGGTTATAATGGATAGAGCCTCTGGACGGTCAAAGGGATACGGATTTGTAACTTATGCAACCGTAGAAGATGCTGAAAAGGCGAGAGCCGGAATGAATGCTAAATTTATTGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCCAGACCTCCTCAGCAGCCACAGTCTCAGCCCTCTGGAGCTGGTTTCACGGTTAACAAGACAATTGGATGGTGTGGTTGA 426 0.4671 MMAFFSGAQRFLWQSSSVVASHFTPTRFTSTLTSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVIMDRASGRSKGYGFVTYATVEDAEKARAGMNAKFIDGWVIFVDPAKPREPRPPQQPQSQPSGAGFTVNKTIGWCG* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g0004 141 SUPERFAMILY RNA-binding domain, RBD 34 135 IPR035979 GO:0003676
Ahy6g0004 141 MobiDBLite consensus disorder prediction 112 133 - -
Ahy6g0004 141 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 141 - -
Ahy6g0004 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Ahy6g0004 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Ahy6g0004 141 Gene3D - 26 135 IPR012677 -
Ahy6g0004 141 PANTHER NUCLEOLAR PROTEIN 8 2 141 - -
Ahy6g0004 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g0004 Ahy-Chr6 103177 106318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g0004 37 126 Eukaryotic Initiation Factors Gene Family AT3G16380 36.559 3.64e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g0004 - - gmx:100306326 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1484 16 32003191 32006599 Ahy6g0004 6 103177 106318 hybridization