Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3375 ATGTCGATGGTGCTGAGGAGGGTGTGGGAACTGGTGTCAAGCACGTCGAGAGGGAACGTGGATGGGAGCGGAGCAGAGGCGTGTTCCCGATCCGATTTGGGAGAGCTGGAGCAGCTGCCGGGAGACATATTGTTGCAAATCCTGAGGGAGTTGGGGCCCAAGGATGCAGCCAAGATGAGCTGCGTATGCAAGGCTCTCAGATGCCTCGTTTTCGACAATCGTTTGTGGGTTCACTTCCTTCAGACCCATCACCCCGACCCTTCTTCCGACTCTCTCTTCTTTGCTGAGGCCACCTTGAGCTATGGCTACCCTCTCCCTCTTCCACCTTTCCATGCCCGCACCCCCCAGCTCTCCTTCAAGCATATTTATGGCCAACGAGCACGCGTTCCTGGTTCCGTTATCATTGATGGCGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAATATGCCTGTCCATCCGGCCGATCAGCAACGTTTTTGATGCAGGAATTCGGTAACATCGAGTCTCCAATGTATACTAGACTACGACATTTTTTTGCAACTATATATAACAGGATGCAGGTGAAACCAAATACACAACCTGTTATTGTTTCCGTACCAATATGTCATTATGATGATACTGAATCAGCTAAAGCATCAAGACGGCAGCTTAAAGAAGCAATATATTCTGCCCTGTTTGACATGAATGTTCCCGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTGTTTGCTGCAAAACGTACTTCTGGAATAGCTGTTAATATAGGGTTTCAAGTCACATCTGTAGTTCCAATTTTTAATGGTAAAGTGATGCGCAGTGTGGGCGTGGAAGTTGTGGGACTGGGAGCACTAAAACTTACAGGATTTCTGAGGGAGAAGATGCAACTCAACAACCTAAATTTTCAGTCTTTATACACTGTCCGCACATTGAAAGAGAAGCTGTGCTATGTTGCTCTTGATTATGAAGCTGAGCTATCAAAAGATACACAAGCATCATTTGAAGCTGTTGGAGAAGGACGGTTTACACCTTCAAAAGAGCGGTTTCAAACTGGAGAGATCTTATTCCAGCCTCATCTTGCTGGAGTGCAAGCAATGGGTTTGCACCAGGCCATAGCTCTTTGCATGGAGCATTGCCATTCTGTGGAATTAGCAGGTGACAGTGATTGGTACAAGACTGTAGTTTTATCAGGGGGTTCTGCATGCTTACCAGGTTTGGCAGAAAGGTTAGAGAAGGAACTAAAGGCCTTACTTCCTCCCTACATATCCAATGGAACCAGAGTCATACCTCCTCCATATGGTGCCGATACTCCTTGGTTTGGAGCAAAGATCATTGGCAATCTGAGCACATTTCCTGGTCCATGGTGTGTGACAAAGAAACAGTTCCGACAGAAGCCGAGACTCAACCTCATTTGGTGA 1419 0.4715 MSMVLRRVWELVSSTSRGNVDGSGAEACSRSDLGELEQLPGDILLQILRELGPKDAAKMSCVCKALRCLVFDNRLWVHFLQTHHPDPSSDSLFFAEATLSYGYPLPLPPFHARTPQLSFKHIYGQRARVPGSVIIDGGSGYCKFGWSKYACPSGRSATFLMQEFGNIESPMYTRLRHFFATIYNRMQVKPNTQPVIVSVPICHYDDTESAKASRRQLKEAIYSALFDMNVPAVCAVNQATLALFAAKRTSGIAVNIGFQVTSVVPIFNGKVMRSVGVEVVGLGALKLTGFLREKMQLNNLNFQSLYTVRTLKEKLCYVALDYEAELSKDTQASFEAVGEGRFTPSKERFQTGEILFQPHLAGVQAMGLHQAIALCMEHCHSVELAGDSDWYKTVVLSGGSACLPGLAERLEKELKALLPPYISNGTRVIPPPYGADTPWFGAKIIGNLSTFPGPWCVTKKQFRQKPRLNLIW* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3375 472 SUPERFAMILY Actin-like ATPase domain 132 254 IPR043129 -
Ahy5g3375 472 SMART fbox_2 39 79 IPR001810 GO:0005515
Ahy5g3375 472 PANTHER ACTIN 85 469 IPR004000 -
Ahy5g3375 472 PANTHER MACRONUCLEAR ACTIN 85 469 - -
Ahy5g3375 472 ProSiteProfiles F-box domain profile. 33 79 IPR001810 GO:0005515
Ahy5g3375 472 CDD NBD_sugar-kinase_HSP70_actin 133 285 - -
Ahy5g3375 472 SUPERFAMILY Actin-like ATPase domain 248 463 IPR043129 -
Ahy5g3375 472 SUPERFAMILY F-box domain 26 126 IPR036047 GO:0005515
Ahy5g3375 472 Pfam F-box-like 37 78 IPR001810 GO:0005515
Ahy5g3375 472 SMART actin_3 130 462 IPR004000 -
Ahy5g3375 472 Gene3D - 133 464 - -
Ahy5g3375 472 Gene3D - 25 129 - -
Ahy5g3375 472 Gene3D - 239 437 - -
Ahy5g3375 472 Pfam Actin 181 462 IPR004000 -
Ahy5g3375 472 Gene3D Actin; Chain A, domain 4 282 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3375 Ahy-Chr5 115535772 115539640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3375 181 468 Cytoskeleton Gene Families AT3G12110 31.650 2.22e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3375 K16616 - gmx:100791973 781.941