Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3373 ATGACAACTAGTTCAGCTCAAGGTTCCACCGATTGGTGCCAGCAAGAGAGTGAGAGAGACACACCAAACGGAAATGAGAAATCCTCCGACGCAGCCACCAAAGCTTATCCAACACCAACGGCTTTGTACGACGACCTTGCCCGTGATTCCAACCTCTTTTGGGATAAGCTTGAATCTTTTCATAAATCATTCGGCACTAAATTTAAGGTTCCCACCATAGGAGGAAGGCCACTAGATCTATATCGCCTTTTCGTGGAAGTAACATCTCGTGGTGGTATTGAAAAGGTAATTGTAGAACGCAAATGGAAGGATGTGATTGTGGGCTTCAAGTTTCGAGAGACTATTACAAGCGCATCATTTATGGTGCGCAGATACTATCTATCATTGCTTTATCACTTTGAGCAAGCGTATTACTTTCGGAAACAAGTCCCTCCTTCCTCAACACCTGATCCTGCAAATAGGAGTCTCGTTGATAGCTCCACACCCTTTGGTGAAGCCGGTAAAACACAGCAGCTTGGTTCTGTGGTGCCTGGAACAATTGATGGGAAGTTTGATGGTGGTTATATAGTTACAGTGAATCTGGGTTCTGAACAGGTGAAAGGTATTCTATACCATGTTCCCATCAGTTTGTCCCAGAGTTCTAATACTGTTGGTGTCCATGGTTCACGGAATCGAAAGAAATCTAGATTGGCATTAGGCGATCCATCTCGGCCGAAGTCAAACAAGAGTGGCTACAATTTCTTCTTTGCTGAGAATTATGCCAGGTTGAGGCCCTTATTCCATGGTGAAGAGAGAGCGATTAGTAAGAGGATTGGGTTTCTATGGAACAATCTAACAGAAGCAGAAAGACAGGTTTATCAGGAGAAAGGGCTGAGAGATAAGGAAAGATACAAGACTGAATTGTTGGAGCACAAGTCGTCCAATAATTGA 930 0.4387 MTTSSAQGSTDWCQQESERDTPNGNEKSSDAATKAYPTPTALYDDLARDSNLFWDKLESFHKSFGTKFKVPTIGGRPLDLYRLFVEVTSRGGIEKVIVERKWKDVIVGFKFRETITSASFMVRRYYLSLLYHFEQAYYFRKQVPPSSTPDPANRSLVDSSTPFGEAGKTQQLGSVVPGTIDGKFDGGYIVTVNLGSEQVKGILYHVPISLSQSSNTVGVHGSRNRKKSRLALGDPSRPKSNKSGYNFFFAENYARLRPLFHGEERAISKRIGFLWNNLTEAERQVYQEKGLRDKERYKTELLEHKSSNN* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3373 309 MobiDBLite consensus disorder prediction 213 239 - -
Ahy5g3373 309 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Ahy5g3373 309 SUPERFAMILY ARID-like 46 147 IPR036431 GO:0003677
Ahy5g3373 309 MobiDBLite consensus disorder prediction 144 170 - -
Ahy5g3373 309 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 21 308 - -
Ahy5g3373 309 Pfam HMG (high mobility group) box 238 300 IPR009071 -
Ahy5g3373 309 SMART ARID_2 44 134 - -
Ahy5g3373 309 CDD HMGB-UBF_HMG-box 238 301 - -
Ahy5g3373 309 MobiDBLite consensus disorder prediction 1 19 - -
Ahy5g3373 309 Gene3D High mobility group box domain 221 309 IPR036910 -
Ahy5g3373 309 SUPERFAMILY HMG-box 235 306 IPR036910 -
Ahy5g3373 309 Pfam ARID/BRIGHT DNA binding domain 51 134 IPR001606 GO:0003677
Ahy5g3373 309 CDD ARID_HMGB9-like 49 134 IPR045303 GO:0003677
Ahy5g3373 309 ProSiteProfiles ARID domain profile. 47 138 IPR001606 GO:0003677
Ahy5g3373 309 SMART bright_3 48 139 IPR001606 GO:0003677
Ahy5g3373 309 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 21 308 - -
Ahy5g3373 309 SMART hmgende2 237 306 IPR009071 -
Ahy5g3373 309 MobiDBLite consensus disorder prediction 146 170 - -
Ahy5g3373 309 Gene3D - 40 150 IPR036431 GO:0003677
Ahy5g3373 309 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3373 Ahy-Chr5 115530656 115532907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3373 22 308 ARID Transcription Factor Family AT3G13350 51.020 2.17e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy5g3373 ARID 7.10E-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3373 - - adu:107491521 627.861