Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3344 ATGGAAGACTACTCAGAGGAAGATTATGAGTTCCTCAACCTTAGCCTTTCAGTTACTACTCCTTCTTCTAGGGAAGCCAAAATCATGAAGAAAAAGAAGAAGAACTATGAAGCCAAGATCTTGAGGCTCCTCCAACTCAGGGAAAACATGCTAAGACAAGATCACCATAACCACCATCACCACCTCCAAAGAAGAAAAGCAGGCACCACCAACAACAACAACAATCTCATCCACTTGCTCCTCACAACGGCCACCGCCATTGATGAAGACAGCAACAACATTGCTGCATCTCTTGACAATCTCACAGATCTGTACCAAACAGTTTCCCTAACAGGTGATTCAGTTGAGCGTGTTGTGGCGTATTTCGCCGATGGCCTCGCCGCGAGGCTCCTCACAAAGAAATCTCCATTCTATGACATGCTCATGGAGGAGCCAACATGTGAAGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCTTACTACCAATTCGCTCATTTCACTGCAAACCAAGCAATCTTAGAAGCCTTTGAAGAAGAAGAAGACAGGAACAACCGTTCAATCCATGTCATTGACTTTGACGTCTCCTACGGATTCCAATGGCCTTCTCTAATCCAATCACTCTCAGAGAAAGCTTCAAGCGGAAACCGCATCTCTCTAAGGATCACCGGATTCGGCACCACTCTGAAGGAGCTTCAAGAAACGGAATCCAGATTGGTGAGCTTCTCCAAAGGCTTCGGTAACCTTGTGTTTGAGTTTCAAGGGTTGTTGAGAGGGTCCAGGATCACGAATCTGAGGAAGAAGAAGAACGAGAGTGTTGCAGTGAACCTTGTTTCATACCTCAACAGTGCGAGCAACAGCAGTTTGTTGATGAATTTCTCTGACACATTGGGATTCGTTCGGTCTCTCAGGCCTTCGGTTGTGGTGCTGGTGAAGCAAGAAGGTAGCAGAAGCATTAGAACGTTCTTGTCTCGGTTCACAGAGTCATTGCATTACTTTGCCGCCATGTTTGATTCCCTTGATGATTGTCTTCCGCTCGAGAGCGCAGAGAGGTTGAGGATTGAGAAGAAGCTTCTCGGGAAAGAGATCAAGAGCATGCTGAACTGTGACATGGAGATGGACGGCGTGGATTGTCCCAAGTATGAGAGGATGGAAGCGTGGAAAGCCAGAATGGAGAATCATGGTTTTGTTGCCATGAAGATGAGCTCCAAATCTCTCATGCAAGCTAAGCTTCTTCTCAAGATGAGGACTCATTATTACTATTCTCCACCACTTCAATTTGATGATGATGCCGCCGCCGCCGCCGGCGGTGGTTTCAGGATTTCTGAAAGGGACCAGGGTAGAGCCATTTCTTTGGGGTGGCAGAATAGGTTTCTTCTCACTGTGTCCGCATGGCAATTACCACTTTCATCATCATAA 1425 0.4646 MEDYSEEDYEFLNLSLSVTTPSSREAKIMKKKKKNYEAKILRLLQLRENMLRQDHHNHHHHLQRRKAGTTNNNNNLIHLLLTTATAIDEDSNNIAASLDNLTDLYQTVSLTGDSVERVVAYFADGLAARLLTKKSPFYDMLMEEPTCEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEEEEDRNNRSIHVIDFDVSYGFQWPSLIQSLSEKASSGNRISLRITGFGTTLKELQETESRLVSFSKGFGNLVFEFQGLLRGSRITNLRKKKNESVAVNLVSYLNSASNSSLLMNFSDTLGFVRSLRPSVVVLVKQEGSRSIRTFLSRFTESLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNCDMEMDGVDCPKYERMEAWKARMENHGFVAMKMSSKSLMQAKLLLKMRTHYYYSPPLQFDDDAAAAAGGGFRISERDQGRAISLGWQNRFLLTVSAWQLPLSSS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3344 474 PANTHER OSJNBA0084A10.13 PROTEIN 13 468 - -
Ahy5g3344 474 Pfam GRAS domain family 76 468 IPR005202 -
Ahy5g3344 474 ProSiteProfiles GRAS family profile. 67 468 IPR005202 -
Ahy5g3344 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 13 468 IPR005202 -
Ahy5g3344 474 Coils Coil 26 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3344 Ahy-Chr5 115326637 115328236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3344 79 468 GRAS Transcription Factor Family AT2G04890 32.242 6.42e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ahy5g3344 GRAS 5.50E-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3344 - - gmx:100813979 633.254